Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00622 ATGATGCCCCCTGAGCAAGAAACCACTATTGCACCAAACATTCCACCCATCTCTATCCGACCAGAGACCAGCTCGGTCCACCATGAACCAGAGGGTTCTACCACTAACAAAATCAAACCAAGTCTGGAACTAGATGATAATGGCATTCCCATGCAGCATCAGACTCAGCCAACACCACCAACACCACCACCACCAAGATTTTCCGTTCTTCACCAAGCCTTGCGCCCCATTATCCTCAAATTCGAAGACGTGTCTTACACTATAACCTTCGAAAGCCAGAAGAAAAAGGGTTGTGTTTTACGTAAAGAGTCAAAGCTAAGAAGAAAGGTGCTGAGCGGCGTGACCGGAGTAGCGAACCCAGGCGAGTTAACAGCAATGCTGGGTCCCTCCGGGAGCGGCAAGACGACCCTTCTAACCGCCCTGGCGGGCAGGCTCGCCGGGAAAGTGTCGGGCACGATAACGTACAACGGACGCAGCGACACCTCCTTCTTGAAACGAAAGGTTGGGTTCGTGCCCCAAGACGACGTTCTCTACCCTCACCTCACAGTGTTGGAGACTCTCACTTACGCGGCTCTGTTGAGGCTGCCCAAGAGTTTGAGCAGAGAAGAGAAGAAGGAGCACGCGGAGATGGTGATCGCGGAGCTTGGCCTCACACGGTGTCGTAATAGTCCCGTTGGAGGGGGCATGGCTCTGTTCCGGGGCATTTCGGGTGGGGAACGGAAACGGGTCAGTATCGGGCAGGAGATGTTGGTCAACCCGAGCTTGTTGTTCGTGGATGAGCCCACTTCGGGTTTGGACTCCACCACAGCCCAACTCATCGTATCGGCGCTCCGAGGGCTCGCCCGGGCGGGTCGGACCATCGTGACCACCATCCACCAGCCTTCCAGCCGGTTGTATAGGATGTTTGATAAGGTGGTGGTCTTGTCCGACGGCTACCCCATTTATAGCGGGCATGCGGGTCGGGTCATGGACTATCTCGGATCTGTTGGGTATGTCCCGGCTTTCAACTTCATGAACCCGGCAGATTTCCTACTTGACCTTGCTAACGGCATCGTTGCTGATGTTAAACATGATGATCAGATAGACCACCCTGAGGATCAAGCTTCAGTCAAACAGTCCCTAATTTCATCCTTTAAGAAGAACTTATATCCTTCTCTTAAAGAAGATATTCAACAAAATAACAGTGACCCTCTGGCTTTTGCATCAGGAACACCTAGACGCTCTGACAACCAATGGACCACTAGCTGGAGGGAGCAATTCAGGGTTCTTCTTAAGAGGGGTTTACAAGAAAGGAGGCATGAATCTTTTTCTGGTTTGAGGATTTTCCAAGTACTGTCTGTGTCCATTCTTTCAGGACTTCTGTGGTGGCACTCTGATTCTGCACATGTACAAGATCAGGTGGGACTCCTGTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCCCTCTTCAATGCCATCTTTGCATTTCCTCTGGAGAGGCCAATGCTAATAAAGGAAAGATCTTCAGGGATGTACCAACTGTCCTCGTACTATGTTGCCAGGATGGTGGGGGACTTACCAATGGAGCTAGTGCTTCCTACCATATTTGTAACTATATCCTACTGGATGGGTGGTCTCAAGCCTTCATTGGTAACATTTGTGTTAACCCTCTTGATCATGCTTTTTAATGTGCTAGTCTCTCAAGGCATAGGCCTAGCTCTTGGGGCCATCCTCATGGATGTGAAGCAGGCCACAACTCTAGCTTCAGTGACCATGCTGGTGTTTCTCTTGGCTGGTGGTTACTACATTCAGCAAATGCCTGCTTTTATAGCTTGGTTGAAGTACATTTCTTTCAGTCACTACTGCTATAAGCTACTGGTAGCAGTCCAGTATCCAATAAATGAGGTATATGAGTGTGGACCAGAGTTACATTGTAGGGTGAGAGATTTCCCTGCCATAAAGTGTCTTGAGCTTGATGATAACATGTGGGGTGAAGTGGCTGCATTGACTGTAATGTTGATTGGATACAGAGTTGTGGCATATCTAGCCTTGAGGATGAGGCAGCCTCACTGA 2052 0.4976 MMPPEQETTIAPNIPPISIRPETSSVHHEPEGSTTNKIKPSLELDDNGIPMQHQTQPTPPTPPPPRFSVLHQALRPIILKFEDVSYTITFESQKKKGCVLRKESKLRRKVLSGVTGVANPGELTAMLGPSGSGKTTLLTALAGRLAGKVSGTITYNGRSDTSFLKRKVGFVPQDDVLYPHLTVLETLTYAALLRLPKSLSREEKKEHAEMVIAELGLTRCRNSPVGGGMALFRGISGGERKRVSIGQEMLVNPSLLFVDEPTSGLDSTTAQLIVSALRGLARAGRTIVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGHAGRVMDYLGSVGYVPAFNFMNPADFLLDLANGIVADVKHDDQIDHPEDQASVKQSLISSFKKNLYPSLKEDIQQNNSDPLAFASGTPRRSDNQWTTSWREQFRVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDSAHVQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYQLSSYYVARMVGDLPMELVLPTIFVTISYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPAFIAWLKYISFSHYCYKLLVAVQYPINEVYECGPELHCRVRDFPAIKCLELDDNMWGEVAALTVMLIGYRVVAYLALRMRQPH 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00622 683 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 52 674 - -
Spst10g00622 683 SMART AAA_5 120 313 IPR003593 GO:0016887
Spst10g00622 683 MobiDBLite consensus disorder prediction 1 63 - -
Spst10g00622 683 Pfam ABC-2 type transporter 292 355 IPR043926 GO:0140359
Spst10g00622 683 Gene3D - 96 329 IPR027417 -
Spst10g00622 683 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 79 335 IPR003439 GO:0005524
Spst10g00622 683 Pfam ABC transporter 113 263 IPR003439 GO:0005524
Spst10g00622 683 Pfam ABC-2 type transporter 418 624 IPR013525 GO:0016020|GO:0140359
Spst10g00622 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 328 IPR027417 -
Spst10g00622 683 CDD ABCG_EPDR 76 317 - -
Spst10g00622 683 ProSitePatterns ABC transporters family signature. 235 249 IPR017871 GO:0005524|GO:0016887
Spst10g00622 683 FunFam ABC transporter G family member 22 98 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00622 Spst-Chr10 6386871 6390740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00622 109 311 Calmodulin-binding Proteins AT2G36910 30.660 1.74e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00622 K05681 - gmx:100792991 1218.37