Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00606 ATGACCATGCAGAAAACATACTCTTTCTCCCGCATATCCTCTTGTGGGAGTGATAGTGCCTGCATAGAAGTTGACGAGTTTGGCAATGAAGATTCCATTTTCCTCTCCCTTGGCCCTCCTTGCCGCCAAAAGTTCGAAGTCTCTAACCCAAAACACTCTTCTGCTATGCGTGGTCATCAGCAAAACCCTAGATCTGAGGACCTAAGTGGTGTAACAGTTGCCCTCCACATTGGCCTACCCACAACGGCTACCAAACCTTCTTCTGCGCCGGTTCATGGTCGATATTGGATCCCTACTCCTCAACAAATCCTTATTGGACCCACTCAGTTCTCTTGCACAGTCTGTAACAAAACGTTCACCCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCAGAGTATAGGAAAGGGACGGAGTCATTGAGAGGGTCAAAAACATGTTCTTCAATGCTGAGGATGCCCTGCTATTGCTGTGAAGAGGGTTGCAGAAACAACATAAACTATCCAAGGTCAAGGCCACTGAAGGATTTCAGGACCCTCCAAACACACTACAAGAGGAAGCACGGAGGGAAGCCATTTGAGTGTAGGAAGTGTCATAAGGCATTTGCAGTGAGAGGGGATTGGAGAACACACGAGAAGAATTGTGGGAAACTTTGGTTCTGCATCTGTGGTTCTGATTTCAAGCACAAGCGGTCCCTAAAAGACCATGTCCGAGCATTCGGCAATGGCCATGCTCCACACACCTTATTGGGTGAAGAAAGAGGCAATGGAGGTGGTGGAGAGCATGAGAGTGGAGTGGTTGTTTTTTAG 816 0.4767 MTMQKTYSFSRISSCGSDSACIEVDEFGNEDSIFLSLGPPCRQKFEVSNPKHSSAMRGHQQNPRSEDLSGVTVALHIGLPTTATKPSSAPVHGRYWIPTPQQILIGPTQFSCTVCNKTFTRFNNMQMHMWGHGSEYRKGTESLRGSKTCSSMLRMPCYCCEEGCRNNINYPRSRPLKDFRTLQTHYKRKHGGKPFECRKCHKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLLGEERGNGGGGEHESGVVVF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00606 271 PANTHER ZINC FINGER PROTEIN WIP2 32 250 IPR043584 GO:0003700|GO:0010468
Spst10g00606 271 Gene3D Classic Zinc Finger 109 132 - -
Spst10g00606 271 MobiDBLite consensus disorder prediction 250 271 - -
Spst10g00606 271 Gene3D Classic Zinc Finger 154 242 - -
Spst10g00606 271 Pfam Zinc finger, C2H2 type 110 129 IPR013087 -
Spst10g00606 271 SUPERFAMILY beta-beta-alpha zinc fingers 91 133 IPR036236 -
Spst10g00606 271 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Spst10g00606 271 SMART c2h2final6 110 132 IPR013087 -
Spst10g00606 271 SMART c2h2final6 158 190 IPR013087 -
Spst10g00606 271 SMART c2h2final6 195 215 IPR013087 -
Spst10g00606 271 SUPERFAMILY beta-beta-alpha zinc fingers 180 215 IPR036236 -
Spst10g00606 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Spst10g00606 271 FunFam Zinc finger protein WIP2 164 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00606 Spst-Chr10 6117449 6118858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00606 28 259 C2H2 Transcription Factor Family AT1G13290 65.975 1.22e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g00606 zf-C2H2_6 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00606 - - gmx:100784037 468.003