Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00600 ATGGAACTTCTCTCTGTGTCTGTCACACTCAGCAAATGTCAATCATTTTCCTTTCCCAAAACAAGGACAACCCAAATTCATGAACTTCCAGTAAATATAAGATTACCCAACAAAATAAATCATTCCAATCTTTCTTCTTCTTCGTGTAAATGGTCTATTACTAGGGTAGCAGTAAAAACATGCCCTTTCCTCAATCCTTCCACCACACAGAACCGATATTGGATGGTGGTCATGGACACACCTCCTCAAGGGCTCAATTCCAAGCCACAAGTCATTGATTATTATGTCAACATTCTACAAACAGTACTCGGCAGTGAAAAAGATGCTCAGATGTGTATATATGATGCTTCATGGGACACCCACTTCGGGTTTTGTTGTGACATTGATGAAGAAATATCCCCCCAGCTGGCCAGTTTGCCTGGGGTGTTGTTGGTTAGGCCTGACCCGGATTTCAACTCTTCGAGAAAGGACTATAGTTTATCAAGGGGCCAGGCAATTCACTCGTCAGGATTACAAACTATTACCAATATGTTGTTCCCTACTGGAAATTCAAAGCATTGGCTTGTTAGAATACATAAACCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTCGATTACTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATATCATGTCTCTTGGAAAACCAACTTCGGGTTTTGCTGTGAACTTGATGAGGATTGTGCTCAAGAGCTGGCTGGTGTGTCAGGTGTCTTATCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAGGATTATGGAGGTAGTAACTTAGAAAGTAGTTGGAATATGTCCAAATCTTCTGAAAGTCAGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTAGTTGAAGTTAAAGTTATTATGGACAAGATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAAGCTGCGAGTGCAGCACTAAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTAGTAGATTTTGCCAAGCCTAACCCACCAAGATACAACAGGAATGCGTTGACAAAAGAGAAAAGGTCTTTACTATTACCAGCTCTGCTGTATGAATTTAGTTCCCTTGACGGGTGGTTTAAGGGAGATGAATGCAATGCATACTTCATTCAAGTAGGCTTGGGCGGGAGATGTTATGTCTTTGGTCTGCACGCAGCAATCATAAGACATTCCGCTTGCACTCAGAAAGAGAAGTTAACTTTTGAGCCTCACAATCCCAAACTTAGGGCAAAACCAACTTTGTTCTCATCTGAGAGGTTATTGGGATCAAACATTAACATGAAAGGTCGAAATTTTGAACTTGAACCCTTTGGTGCTGGAAGGCGCATATGCTCGCTCTATTGGGATGTTGGGTTCCCTGATCAACTTCTTTGA 1515 0.4119 MELLSVSVTLSKCQSFSFPKTRTTQIHELPVNIRLPNKINHSNLSSSSCKWSITRVAVKTCPFLNPSTTQNRYWMVVMDTPPQGLNSKPQVIDYYVNILQTVLGSEKDAQMCIYDASWDTHFGFCCDIDEEISPQLASLPGVLLVRPDPDFNSSRKDYSLSRGQAIHSSGLQTITNMLFPTGNSKHWLVRIHKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVSGVLSVQPDNNFESENKDYGGSNLESSWNMSKSSESQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDFAKPNPPRYNRNALTKEKRSLLLPALLYEFSSLDGWFKGDECNAYFIQVGLGGRCYVFGLHAAIIRHSACTQKEKLTFEPHNPKLRAKPTLFSSERLLGSNINMKGRNFELEPFGAGRRICSLYWDVGFPDQLL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00600 504 SUPERFAMILY RNA-binding domain, RBD 284 380 IPR035979 GO:0003676
Spst10g00600 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Spst10g00600 504 FunFam Organelle RRM domain-containing protein 1, chloroplastic 175 264 - -
Spst10g00600 504 Gene3D - 267 390 IPR012677 -
Spst10g00600 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 364 IPR000504 GO:0003723
Spst10g00600 504 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 179 265 IPR037045 -
Spst10g00600 504 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 60 152 IPR037045 -
Spst10g00600 504 SMART rrm1_1 297 370 IPR000504 GO:0003723
Spst10g00600 504 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 177 365 IPR039206 GO:0016554
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00600 Spst-Chr10 6056046 6061490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00600 287 381 C2H2 Transcription Factor Family AT2G19380 33.684 3.86e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00600 - - vun:114191397 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00600 10 6056046 6061490 Spst10g00600 10 6056046 6061490 ECH