Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00587 ATGTCACTGGGACAATACAACAGTCCCTATTCTCACCCTTTCACTCCACCATTTTCTGATTCACCCTCCATCTCCATACCCACCGTGAAAAGCATGCATCTTTGGTGCCACTGCGACAAACCCACTTCAGATTCTCCTCTGAAACCCACGGAGGGTGTTGTTGGCGGTATGATTTCTTCTGGGATCAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTTTTCGTCTGCACCAGGCTCATATGTGCTCGAATTCACTTAAATGCTGCAAGGAGATCCTTTCCTATTGTCTCCAGATCCAATCTCAGCATGATGGAGCGGGGTTGCCATGGTCTTGAACGTGTAACTGTAGCCCAATTTCCAACAAAGATGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCAATGCACAGTCTGCCTCTCAGAATACCAAGGGGAGGATATGTTGCGTATCCTTCCTTATTGTGGACACTCTTTCCATGTGACCTGCATAGACCTATGGCTGCAGCAGAACTCCACATGTCCTGTTTGTCGAATATCGTTGCGCGAATTCCCAGACAGAAAGCGGTTAATGCAGCCCATGTTCAGCTCTGCTTTGCAACCTCACTATGGCATAGAATCCTTTGACACACATCATTATCACTGTATGATGGCTGATAATGGACTATCATCAACAACCCCACACAACCATGGGTTGAATCCTGTAGAAGAAGATCACTTTCCTTCTGAGGGTGGTGGAGCAGTTTCTGTGGACAATATCACCTGTTTAAGTGAGGGTAACTTCACAAAAGATGAAGGGAAGAAGCATGTAGAGAGTCCATCAAACTTCCAGAATTGA 858 0.458 MSLGQYNSPYSHPFTPPFSDSPSISIPTVKSMHLWCHCDKPTSDSPLKPTEGVVGGMISSGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNAARRSFPIVSRSNLSMMERGCHGLERVTVAQFPTKMYSDKFFAAAENSQCTVCLSEYQGEDMLRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPDRKRLMQPMFSSALQPHYGIESFDTHHYHCMMADNGLSSTTPHNHGLNPVEEDHFPSEGGGAVSVDNITCLSEGNFTKDEGKKHVESPSNFQN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00587 285 CDD RING-H2_EL5-like 142 185 - -
Spst10g00587 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 190 IPR013083 -
Spst10g00587 285 Pfam Ring finger domain 142 185 IPR001841 -
Spst10g00587 285 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Spst10g00587 285 PANTHER OS11G0150450 PROTEIN 57 241 - -
Spst10g00587 285 SUPERFAMILY RING/U-box 137 191 - -
Spst10g00587 285 SMART ring_2 143 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00587 Spst-Chr10 5944535 5946771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00587 103 188 C3H Transcription Factor Family AT4G10150 44.186 1.63e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00587 - - gmx:100794979 445.277