LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst10g00565	ATGTTGGAAATGGAGAAGGAGTTTGATTCCAAGCTGAAGGTTCAGGGGAATTCATCATCTTCCAATGGTGGAGGCAGTGTCCAGAGATCCAAGAGCTTTGCTTTTAGGGCTCCTCAAGAGAATTACTCTATTCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCTTATTCTAAGGTTGTGAGGGCAAAGAAGAAGGACACAGGAACTGTGTATGCATTGAAGATCATGGATAAAAAATTTATTACCAAAGAGAACAAAACAGCTTATGTGAAATTGGAACGCATTGTGCTAGATCAATTGGATCATCCAGGCATTGTGCGCGTGAAGCTCAAGCTTTCTGATTTCTCGGTGCAGAAAGGTCGTCTAACTGAGGCTGAGGCACGGTTCTATGCAGCTGAAGTTGTCGATGCTCTTGAATACATACATAGTTTGGGAGTGATACACCGTGATATTAAGCCAGAGAACTTATTACTTACTGCTGAAGGACACATTAAAATAGCTGATTTTGGGAGCGTGAAGCCTATGCAGGATAGTCAAATCACTGTCCTTCCAAATGCAACGTCAGATGACAAAGCCTGCACTTTTGTGGGGACTGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCGGCAACTTTTGGAAATGACCTATGGGCACTTGGCTGCACATTATACCAAATGCTTTCAGGAACTTCTCCTTTTAAAGACGCAAGTGAATGGCTTATTTTTCAACGAATTATAGCAAGAGAACTTAGATTTCCAGATTACTTTTCTGACGAAGCAAGAGACCTTATTGACCGTCTGTTGGATTTGGACCCCGCCAGGAGACCAGGTGCTGGACCTGATGGTTATACTATTTTAAAATTACACCCATTTTTCAAGGGGGTTGATTGGGATAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCTGGAACCTGGGACTCAGTCACCTGCAGCTGATGATATTCATGATTCATCGTGGAGTCCTTCTCACATTGGGGAAGGTTCTGTGTCTATGACTAGACAGCCTGATGGTGCTACATCTTCTGATGGGACTAGTCACATAGCTAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAATTTTTAGATCCTGGGGAATCTGTTCTTATGATCTCTATGGTTAAGAAACTACAAAAACTAACAAGCAAGAAGGTGCAGCTCATCCTCACCAACAAACCTAAGTTGATCTATGTGGACCCATCAAAGCTAATTGTGAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATCCAAGTGACTACTCCATCACATTTCAAGATTTGCACTCCTAAAAAGGTAATGTCATTTGAAGATGCAAAACAAAGAGCATGGCAGTGGAAAAAGGCAATTGAAGGACTTCAAAACCGGTGA	1422	0.4184	MLEMEKEFDSKLKVQGNSSSSNGGGSVQRSKSFAFRAPQENYSIQDFELGKIYGVGSYSKVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRVKLKLSDFSVQKGRLTEAEARFYAAEVVDALEYIHSLGVIHRDIKPENLLLTAEGHIKIADFGSVKPMQDSQITVLPNATSDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARELRFPDYFSDEARDLIDRLLDLDPARRPGAGPDGYTILKLHPFFKGVDWDNLRAQIPPKLALEPGTQSPAADDIHDSSWSPSHIGEGSVSMTRQPDGATSSDGTSHIARLASIDSFDSKWQQFLDPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTTPSHFKICTPKKVMSFEDAKQRAWQWKKAIEGLQNR	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst10g00565	473	MobiDBLite	consensus disorder prediction	323	356	-	-
	Spst10g00565	473	Gene3D	Transferase(Phosphotransferase) domain 1	114	311	-	-
	Spst10g00565	473	Gene3D	-	343	473	IPR011993	-
	Spst10g00565	473	PANTHER	SERINE/THREONINE-PROTEIN KINASE	28	312	-	-
	Spst10g00565	473	FunFam	3-phosphoinositide-dependent protein kinase 2-like	113	311	-	-
	Spst10g00565	473	SUPERFAMILY	PH domain-like	290	472	-	-
	Spst10g00565	473	Pfam	PH domain	370	472	IPR033931	-
	Spst10g00565	473	MobiDBLite	consensus disorder prediction	13	29	-	-
	Spst10g00565	473	Coils	Coil	453	473	-	-
	Spst10g00565	473	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Spst10g00565	473	Gene3D	Phosphorylase Kinase; domain 1	2	113	-	-
	Spst10g00565	473	MobiDBLite	consensus disorder prediction	315	356	-	-
	Spst10g00565	473	FunFam	3-phosphoinositide-dependent protein kinase 1	344	473	-	-
	Spst10g00565	473	ProSiteProfiles	Protein kinase domain profile.	47	296	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst10g00565	473	SMART	serkin_6	47	296	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst10g00565	473	Pfam	Protein kinase domain	49	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst10g00565	473	SUPERFAMILY	Protein kinase-like (PK-like)	44	351	IPR011009	-
	Spst10g00565	473	MobiDBLite	consensus disorder prediction	8	29	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst10g00565	Spst-Chr10	5662452	5671082	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst10g00565	1	473	AGC Kinase Gene Family	AT3G10540	75.764	0.0	759

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_PDK1	Spst10g00565		Pkinase	6.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst10g00565	K06276		-	gmx:100788780	851.662