Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00561 ATGAACTGTCTTCACAATCTTCCTCGATTCTGTCCTTTGTCCTTCGAAACTGTTGCTACGCGCCACCGAAACAACCTTACCCTTTCCCAGGGATTCTTCAATAATTCTCATCAAAATCGAAGTATGGCGCTCAAGGCTGCTTCAGGTTCTATACCTGGTGCAGACAAAAGTAGTGTCGATAAGGAGGTGGAAAAGTCTGAGACATATTCTCATAGCATGGCAAAAGCCATGGGTGCTGTTTTGTTTTATAAGCATGAATTAGGAATGAACTATAACTTCATCCGTCCAGACTTGATTGTGGGATCATGCCCGCAGACTCCTGACGATGTTGAGAAGTTGCGTGGAATTGGCGTTAAAACTATATTTTGCTTACAACAAGATTCAGACCTCGAATATTTTGATGTTGATATTAATGCCATACGAGAATATGCCAAGACACATGATGTTCAACACTTGCGTGCTGAGATAAGAGACTTTGATGCATTTGATCTACGGATGCGGCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCATCGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCAACGGCCTATATGTTTTGGGTTCTGGGTTACAAACTTTATGAGGCGCATACACTACTTCAGAGCAAAAGGGAGTGCTTTCCGAAACTAGATACCATTAAAAGTGCAACGGTGGACATTCTTACAGGGCACAGCAAGAAATCTGTCACTTTGTCATGGGAAGACAGCAATTGCTCTAGTGTCGAAATTGCAGGACTTGATATTGGATGGGGACAGAGAATACCCCTAGATTTTGACGATAAAGCGGGTTTGTGGTATCTCGAGAGGGAATTGCCTGAAGGACGCTACGAGTATAAATACATTGTTGATGGGGAATGGACATGCAATAAAGATGAGCTTGTAACTGCTCCCAACAAAGATGGTCATGTCAACAATTTCATTCTAGTCCTTGATGATAGCAGCAGTGATCGTGTCTCCCTCCGGGAAAGATTTGCATCTGATGATCCTGATCTCACAGCGGATGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGACGAAGGTCTGTGA 1116 0.4301 MNCLHNLPRFCPLSFETVATRHRNNLTLSQGFFNNSHQNRSMALKAASGSIPGADKSSVDKEVEKSETYSHSMAKAMGAVLFYKHELGMNYNFIRPDLIVGSCPQTPDDVEKLRGIGVKTIFCLQQDSDLEYFDVDINAIREYAKTHDVQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSIGGVTYIHCTAGLGRAPAVATAYMFWVLGYKLYEAHTLLQSKRECFPKLDTIKSATVDILTGHSKKSVTLSWEDSNCSSVEIAGLDIGWGQRIPLDFDDKAGLWYLERELPEGRYEYKYIVDGEWTCNKDELVTAPNKDGHVNNFILVLDDSSSDRVSLRERFASDDPDLTADERLRIKEFLEACPDEGL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00561 371 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 166 224 IPR000387 GO:0016311|GO:0016791
Spst10g00561 371 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 8 368 - -
Spst10g00561 371 ProSiteProfiles Dual specificity protein phosphatase domain profile. 90 246 IPR020422 GO:0006470|GO:0008138
Spst10g00561 371 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 83 264 - -
Spst10g00561 371 Pfam Glycogen recognition site of AMP-activated protein kinase 249 331 IPR032640 -
Spst10g00561 371 CDD E_set_AMPKbeta_like_N 248 329 - -
Spst10g00561 371 SUPERFAMILY E set domains 248 330 IPR014756 -
Spst10g00561 371 Pfam Dual specificity phosphatase, catalytic domain 132 227 IPR000340 GO:0008138|GO:0016311
Spst10g00561 371 SMART dsp_5 90 239 IPR020422 GO:0006470|GO:0008138
Spst10g00561 371 Gene3D Protein tyrosine phosphatase superfamily 83 362 IPR029021 -
Spst10g00561 371 CDD DSP_laforin-like 89 235 IPR045204 GO:0019203
Spst10g00561 371 Gene3D Immunoglobulins 244 334 IPR013783 -
Spst10g00561 371 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 244 334 - -
Spst10g00561 371 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 230 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00561 Spst-Chr10 5631370 5638005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00561 89 368 Protein tyrosine phosphatase (PTP) family AT3G52180 67.260 5.74e-143 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00561 - - gmx:100786287 615.92