Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00549 ATGACAGATTTTCAGCCGCTACAGCAGAAGCCCGAGCCTGCTGATTCTCATACCGAGTTTGAGAGGGGACTGGAGGAGTTTATGCGTGGGCACTTGGATGATTGTATGTCATTTGCTTCGTGTAGCTCCTCCCGTGCACCTGATGATGAGGATGACGAGAGCGATCAGCTGGTTCGGAGGAGACGCAGGTCTGACCTTGAAGGGGATGATTTGGCAGAGTCGTCCGCCGCACGCCGGCGGCATTCAAGGATTTTGAGCAGATGGGCTGCACGGCAGGCACAGGAGATGATAACTACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCGGGTTTACATACTGTGTCAATGTTGGATTCTTCTTTCCTGAGGGGCTCACAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGACCAAGCACTCAGGCGTCTGCCATTCTGCAGATGTGGCGTGAATTGGAAGATGAACATTTGTTGAACCGGGCACGGGAAAGGATGAGGGTAAGGTTGCGGCAGCAAAGGAGTTCTGACTCTAATACCCATGTGTCCAGTAACATGTCTGATAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAACGATTATGGTACTTGGTCACATGATCAGATTAGGTCGAGAAATGCACATGGGGATCATAATGTGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGGCAGATTGTTAGGGGGTGGATGGAAAGTGGCATTAGTGATCATTCATCCAATGTGAGTCAGAGAAACAATAACCGGAGAGCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACCAGCCAGCAGAGAGGTTCCCGTGGGAGCCGGAGGGATTCTCAAGTAAGTGAGGGTGGTCAAGCTGATCGAGGCCGTGATGTAGCCGATAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGATATGTTGAGGCTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTCAGGGTAGAAAGGGAAAGGCAAAGAGAGCTGCAGGGATTGTTGGAGCATCGAGCTGTCTCTGATTTTGCTCATCGCAATCGTATTCAGTCACTGCTTAGAGGTAGATTCCTTCGAAACGAAAGAACAGTTGAAGATGAGAGGCCACCATCTATGGCTGCAAGTGAACTAGTTCAGCTAAGACAACGGCATACAGTCTCTGGTTTAAGGGAGGGTTTTCGATCAAGATTAGAAAATATTGTTCGTGGTCAAACAGGCACCAATCCTGATACCACATCAAATAGTAATGCCATTGAAACAAGAGGGGATGAAAACCAAGCAAACAGTCTAGTTAATGGCCAACAAGAACATTATGAACAACAGCAGATTAGGAGCCTGGAAGCTGATGTGCGTCAGTTGCCTAATCGGACAGGAACTTTGGAGAGTAGCACAAGTGAGAATATTAGTTGGCAAGAAGCTAGTAACCAAGGAGGGAATTGGCAGGAACAAATTGCTGAAGATGGGGGAGGAAACTGGCAACAGAGTCCATTCTCTCAGACGAGAGATGGAAGGGCAGTCAATGATTGGCCACAGGAACCTCCCAGGAATTTAGCTGGGGAAGATCCTCATCCTCGAGAAGCTCAAAGAATTTGGCATGAGGATAGCACAAGGGAAACTGCTAGTAATTGGTCTGAAGGAGCTTCTGGAGCTTCAAGGAATCATCGTGGGGTTCCTGTGAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGGAGTGTTTCTAACCTTCTTCGTAGTGGATTCCGTGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATCGGAACTTGCCAACGCCAGCTCCTGCTTCACCTGAACGGGAGCCAGACCAGCGGGGTGATGAACGAGATGAGGGTCAGAATGAAACAATTAACAGACCTTCATTAGTGTTGCCAACTCCACCAGTGCCTCCGCCACAACCTATGTGGCACCAGGATTTACATCAAACTGGATGGTCACGCCATAGCATACATCGTTCCGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGATATGGCTAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCGTGCATGGATATGCAACTGGAGTTGCAGCGTTCTGTTAGACAGGAAGTATCTGCAGCTCTGAACCGCTCCACTGGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGCTGTGATAACCATATCGATTCACTTTTGTACAGATGTGGGCACATGTGTACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2547 0.4806 MTDFQPLQQKPEPADSHTEFERGLEEFMRGHLDDCMSFASCSSSRAPDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRQQRSSDSNTHVSSNMSDSRGSENQGSLGDASESENDYGTWSHDQIRSRNAHGDHNVSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVSEGGQADRGRDVADNDESQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQTGTNPDTTSNSNAIETRGDENQANSLVNGQQEHYEQQQIRSLEADVRQLPNRTGTLESSTSENISWQEASNQGGNWQEQIAEDGGGNWQQSPFSQTRDGRAVNDWPQEPPRNLAGEDPHPREAQRIWHEDSTRETASNWSEGASGASRNHRGVPVRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPAPASPEREPDQRGDERDEGQNETINRPSLVLPTPPVPPPQPMWHQDLHQTGWSRHSIHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSTGENGLGAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00549 848 MobiDBLite consensus disorder prediction 221 244 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 313 338 - -
Spst10g00549 848 Coils Coil 725 745 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 40 78 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 488 537 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 432 451 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 125 146 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 296 312 - -
Spst10g00549 848 ProSiteProfiles Zinc finger RING-type profile. 796 835 IPR001841 -
Spst10g00549 848 MobiDBLite consensus disorder prediction 665 680 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 550 571 - -
Spst10g00549 848 Pfam Zinc finger, C3HC4 type (RING finger) 793 840 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 173 244 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 431 451 - -
Spst10g00549 848 CDD mRING-HC-C3HC5_NEU1 793 845 - -
Spst10g00549 848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 846 IPR013083 -
Spst10g00549 848 MobiDBLite consensus disorder prediction 52 78 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 488 595 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 179 220 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 1 23 - -
Spst10g00549 848 SUPERFAMILY RING/U-box 795 841 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 296 338 - -
Spst10g00549 848 MobiDBLite consensus disorder prediction 649 690 - -
Spst10g00549 848 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00549 Spst-Chr10 5503399 5509381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00549 760 842 C3H Transcription Factor Family AT3G06140 32.530 1.11e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00549 - - gmx:100805607 1493.79