Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00542 ATGTGGTCATCCAATGAAGAAGAATATAAAAAATCTCAGCCTCCATATGATAACAGGAGTGGCTACAATTCAAGAGAAGGCCTTTATCATTCTCTAGTTAAGCTTGGCACAAAGCATGAAATCCCAACAAGCCCTGACCTTAACACTGCCAATTATGTGCTGTCACAGTTCCCACTTGCTGAGGGAAAAATTGCATTCATTGATTCAGGTTCTGATCGGAGTGTAAGCTATGGTGAGCTAAGACGGTCTATTTACTCCCTTGCATCAGCTTTGTTCCATGAACATGAGGTCAGGAAAGGTGATGTGGTATTTGTATTGTCGCCAAACACAACCTTATACTCAACCATATGCCTAGCTGTGTTATCAGTTGGAGCAGTTGTGACCACCGCCAACTCCATCAATACTGAGTCAGAAATTTCCAAGCAATTGCGTGATTCAGGTGCTAAACTAGCCATCTCAGCACCTGAGGAGCTACACAAATTGGTCCCAACTGGGGTTCCTACAATTCTCACTTCTCGTCTTTCTGATGGAAACGTGTTATCAGTTGAAGAGGTAATAGAAGGCTGTTATAATTCACCTGAGCTGCCACAAATTCCTGTGGCACAGTCAGACACTGCTACTATACTTTACTCTTCGGGGACCACAGGGATAAGCAAAGGTGTAGTTTTGACACATGCAAATTTAATTTCTATAATGCGACTACTCTTCTGGCAAGTTGATGTTACTGCATCCCAAGATGACATTTTCTTGGCCATCATTCCAATGTTTCATATCTATGGACTTATGTTCTTTGGATTAGGATTGTTGTGTGTTGGTGTTACTACAGTTCTGATGCAGAAATATGACTTCCAAGCTATGCTTGTTGCAATCCAGAAGCACAAGGTGAATAACTTACCAGCAGTGCCACCAGTGATTCTTGCACTAGTAAAATATTCAAGGAAAGCTAGGTGTGACTTGTCCAGCCTAAGAAGAGTGGTGTCAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACAGGAGTTCAGGAAGATGTTTCCATGGGTTGAACTAAGGCAAGGTTATGGGCTAACAGAAAGTAGTGGTGGAGCAACCTTTTTCGCCTCAGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGCTGATTCCAACATTTTTTGCAAAAGTTGTAGACACTGAAACGGGGAAGCCTTTGCCTCCTCACAAAGAAGGAGAGTTGTGGTTCAAAAGTCCTACTATTATGAAAGGGTATCTAGGAAATTTGGAGGCAACAAGTGCAACAATTGATTCAGAAGGTTGGTTGAGGACTGGTGATCTTGGTTACATTGACGAGAATGGATTTGTTTACATAATTGAACGGATAAAAGAACTAATCAAGCACAACGGGTATCAGGTGGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCTCTTATAGCTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAACGGCTGGTTCAGAACTCTCAGAAGACCAAGTCATTGAATTTGTTGCAGGCCAGGTGGCTCCATATAAGAAAGTGAGAAGGGTGAGGTTCATTGACACTATTCCAAAGTCAGCTTCTGGCAAGATATTGCGGAAGGATCTTGTTTCTCAGAGCAAACGTCAAGTTGTCTCCAAGTTATGA 1689 0.4275 MWSSNEEEYKKSQPPYDNRSGYNSREGLYHSLVKLGTKHEIPTSPDLNTANYVLSQFPLAEGKIAFIDSGSDRSVSYGELRRSIYSLASALFHEHEVRKGDVVFVLSPNTTLYSTICLAVLSVGAVVTTANSINTESEISKQLRDSGAKLAISAPEELHKLVPTGVPTILTSRLSDGNVLSVEEVIEGCYNSPELPQIPVAQSDTATILYSSGTTGISKGVVLTHANLISIMRLLFWQVDVTASQDDIFLAIIPMFHIYGLMFFGLGLLCVGVTTVLMQKYDFQAMLVAIQKHKVNNLPAVPPVILALVKYSRKARCDLSSLRRVVSGAAPLSKEVAQEFRKMFPWVELRQGYGLTESSGGATFFASDKDAKAHPDSCGKLIPTFFAKVVDTETGKPLPPHKEGELWFKSPTIMKGYLGNLEATSATIDSEGWLRTGDLGYIDENGFVYIIERIKELIKHNGYQVAPAELESVLLSHPLIADAAVIPVEDEETGQIPMAYVVRTAGSELSEDQVIEFVAGQVAPYKKVRRVRFIDTIPKSASGKILRKDLVSQSKRQVVSKL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00542 562 CDD 4CL 41 550 - -
Spst10g00542 562 Pfam AMP-binding enzyme 62 459 IPR000873 -
Spst10g00542 562 Pfam AMP-binding enzyme C-terminal domain 469 544 IPR025110 -
Spst10g00542 562 Gene3D - 456 560 IPR045851 -
Spst10g00542 562 ProSitePatterns Putative AMP-binding domain signature. 208 219 IPR020845 -
Spst10g00542 562 SUPERFAMILY Acetyl-CoA synthetase-like 46 553 - -
Spst10g00542 562 Gene3D - 36 455 IPR042099 -
Spst10g00542 562 FunFam 4-coumarate--CoA ligase 2 456 557 - -
Spst10g00542 562 MobiDBLite consensus disorder prediction 1 23 - -
Spst10g00542 562 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 42 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00542 Spst-Chr10 5426571 5428504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00542 17 551 Monolignol Biosynthesis Gene Families AT1G20500 43.956 6.51e-155 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00542 K10526 - gmx:100783104 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00542 10 5426571 5428504 Spst10g00542 10 5426571 5428504 ECH