Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00541 ATGTCAGGAGAGGAAATCTTGTCATCAAATGAAGAAGATTGTAATAAATCTCAGCCTCCATTTGTTAACAGAAGTGGCTACAATTCAAGAACAGGCATCTATCACTCTCTAGTTAAGCTTGACACTAAGCACGAAATCCCAACAAAGCCTGACCTTAACACTGCCAATTTTGTGCTGTCACAGTTCCCACAAGCACACCTTGCTGAGGCCAAAACTGCATTCATTGATGCAAGCACTAATCTGAGTGTTAGCTATAGTGAGCTAAGAAGGTATACTTACTCCCTTGCAGCAGCTTTGTTCCATGGACTTGAGGTTAGGAAAGGTGATGTGGTATTTGTATTGTCACCAAACTCAACCTTGTACTCAGCTATATGCCTAGCTGTGTTATCAGTTGGAGCAGTTCTGACCACTGCCAACCCCATCAACACTGCATCAGAAATTGCGAAACAAGTGCGTGATTCGGGTGCTAAACTGGCCATCTCCTCACCAGAGGAGCTACACAAATTGGACCCAACTGGGGTTCCTACAATTCTCACTTCTCGTTCTTCTGATGGCCGCATGTTATCAGTTGAAGAGTTAATAGAAGGTTGTTATGATTCAACAGAATTCCCACAAGTTCCAGTGGCACAATCAGAGACTGCTGCTATACTTTACTCTTCAGGGACCACAGGGATAAGCAAAGGTGTGGTTTTAACTCATGCAAATCTCATTTCCATAATGAGATTAGTTTTATGGTCTGCTGATGTCAGTGGATCCCAAGATGATATTTACTTAGCCTTCATTCCAATGTTTCACATCTATGGACTTGTGTTCTTTGGCTTAGGATTGTTGTGTGTTGGTATCACAACAGTTTTGATGCAGAAGTTTGACTTCCAATGTATGCTGGATGCAATCCAGAAGCACAAGGTTAGCAACATACCAGCAGTGCCACCGGTGATCCTTGCGCTAGTAAAGTATTCAAGCAAAGCAAGTTGTGACTTGTCCAGCCTAAGAAGAGTGGGAACAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACAGGAGTTCAGGAAGATTTTTCCATGGGTTGAACTAAGGCAAGGTTATGGACTAACAGAAAGTAGTGGTGGAGCAACATTTTTTGTCTCGGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGCTGATTCCAACATTTTTTGCAAAAGTTGTAGACACTGAAACGGGGAAGCCTTTGCCTCCTCACAAAGAAGGAGAGTTGTGGTTCAAAAGTCCTACTATTATGAAAGGGTATCTAGGAAATTTGGAGGCAACAAGTGCAACAATTGATTCAGAAGGTTGGTTGAGGACTGGTGATCTTGGTTACATTGACGAGAATGGATTTGTTTACATAATTGAACGGATAAAAGAACTAATCAAGCACAACGGGTATCAGGTGGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCTCTTATAGCTGATGCAGCAGTAATACCGATTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAACAGGTGGTTCAGAACTCTCAGAAGACCAAGTCATTGAATTTGTTGCAAACCAGGTGGCTCCATATAAGAAAGTGAGAAGGGTGAGTTTCATTGACACTATTCCAAAATCAGCTGCTGGCAAGATATTGCGAAAGGATCTTGTTTCTCAGAGCAAATATCAAGTTGTCTCCAAGTTATGA 1713 0.425 MSGEEILSSNEEDCNKSQPPFVNRSGYNSRTGIYHSLVKLDTKHEIPTKPDLNTANFVLSQFPQAHLAEAKTAFIDASTNLSVSYSELRRYTYSLAAALFHGLEVRKGDVVFVLSPNSTLYSAICLAVLSVGAVLTTANPINTASEIAKQVRDSGAKLAISSPEELHKLDPTGVPTILTSRSSDGRMLSVEELIEGCYDSTEFPQVPVAQSETAAILYSSGTTGISKGVVLTHANLISIMRLVLWSADVSGSQDDIYLAFIPMFHIYGLVFFGLGLLCVGITTVLMQKFDFQCMLDAIQKHKVSNIPAVPPVILALVKYSSKASCDLSSLRRVGTGAAPLSKEVAQEFRKIFPWVELRQGYGLTESSGGATFFVSDKDAKAHPDSCGKLIPTFFAKVVDTETGKPLPPHKEGELWFKSPTIMKGYLGNLEATSATIDSEGWLRTGDLGYIDENGFVYIIERIKELIKHNGYQVAPAELESVLLSHPLIADAAVIPIEDEETGQIPMAYVVRTGGSELSEDQVIEFVANQVAPYKKVRRVSFIDTIPKSAAGKILRKDLVSQSKYQVVSKL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00541 570 CDD 4CL 46 558 - -
Spst10g00541 570 Pfam AMP-binding enzyme 69 467 IPR000873 -
Spst10g00541 570 Gene3D - 41 463 IPR042099 -
Spst10g00541 570 FunFam 4-coumarate--CoA ligase 2 464 565 - -
Spst10g00541 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 560 - -
Spst10g00541 570 Gene3D - 464 567 IPR045851 -
Spst10g00541 570 MobiDBLite consensus disorder prediction 1 27 - -
Spst10g00541 570 FunFam Long-chain-fatty-acid--CoA ligase FadD 43 463 - -
Spst10g00541 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Spst10g00541 570 SUPERFAMILY Acetyl-CoA synthetase-like 64 561 - -
Spst10g00541 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00541 Spst-Chr10 5420679 5422643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00541 24 559 Monolignol Biosynthesis Gene Families AT1G20500 44.241 2.42e-154 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00541 K10526 - gmx:100783104 994.956