Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00539 ATGGGTCCCGGCTTCCGATTCAACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTGAAGCGCAAGATCACCGGAAAACTCTCCCGGTACGACCACATCGCGGTCGTCGACGTCTACAAGCTCGAGCCCTGGGACCTTCCCCCTCTGTCGAAGCTGAAGACCAAGGACTTGGAATGGTACTTCTTCAGCGCGCTCGACCGCAAGTACGGAAATGGCTCCAGGAACAACCGCGCCACCGAGAAGGGTTACTGGAAGACCACTGGTAAAGACCGCCCTGTCCTCCAAGGCGACCGCCGCGTCGGGATGAAGAAGACCCTCGTTTACCACATTGGCCGGGCCCCACACGGCCGTCGCACCAATTGGGTCATGCACGAGTACAAAATGCTCGATGAAGAATTGACACGTGCTGGCACAGTGCTGAAGGATGTGTTTGTAGTGTGTAGGATTTTCGAGAAGAGTGGCGCTGGACCAAAGAATGGGGCCAAGTATGGTGCCCCCTTGGACGAGAATGAGTGGGACGTGGAGGAAGAGAATGAGCTGAAGGAGGTGGCTCCCTTGCCAGCGAATGCTGATGATCCGGTGGCACCATTGCCGGAGACCCCTCAGGATGTGGTGACTCCTCCGTGGGAGATTGATTATGGTGATGTTTGGGGTGCTTTTGCTAATGGGGCCTATGTGGAAGCTTCTGACCTTGACGTGGTTTTAATATCTCAATATTGTTGTGGGGCCATTATTTGGGTTGCTATTAGCTCTAATGTTGTTTGTGTTGTCCTTTTCGTAATCGTGTTTGGGAGAGGTCTTCCTGGTGACAGTTCTTTAGAAAAGCTTGATTTGAGTGATATGAATGGAAGTGTTACTTTTCCATCATCGAACTTTTATTACGGGGAGAGTAGTACCCACGCTGAGCATTCCCAAGAACTCATCAAGGATCAGGAGCCATCGGCAGTCACCTTCGGGATTTCTGGGCCTGAAAATGGCCAAACTCTTGATATGGCTGACCAATATGGCATGGGTACAAGTTCAATGAATGGAGACAATGGTGAGCCAAGCGAGATTGAGAAGCTTCTCGATTTCAAAGATGCATCGGATGATATGCATCTGGATCTATACTTTGATGCCATCCAGAATCTTCCAATGGCTGATGATGAATCATTCTTGGAAACCAATGATCTAACAATTGGGAATGAGGATAATCCCGCTGAGGCTGATCCTTCTGCGAATGCTATGCTAGACGAGTATCTAGCACTCCCTGCTGATGATATTTGCAATTATATATCTTTTGATTATTCTCAGATTCCAGAGGGTGAAAACTCTATTGCCAACCAAGGATCACCTTCAACCCAGCAGAGTGTGGAGGGAGAACCCGCTGATAAAGATGTGGTTAGTAAACATGATTCTGAAGCACAAACCAGCAATGAGGCTTTTTCTGTGCGGAATGCAGAGGAGGCAAAGTCAGCACCAGGAAATACAAATCCATTTGTTAAGCAGGCCAATGGATGGTTAGCTAGCATACCTGCCGCACCTGCACATGCTTTTGAGTTTCCAGCTAAGGAGATTACTATTGGGCTTCATCATGCAGCTCAGTCTTCCCATCCAGCTCATATAACTACGGGTATGATCAGCATTACAGATATTGCTTTTAGAGGCAGTGCCATGGATTGGCCGATGGGGAAAAATGGTGGGTTTAACAATGCTATATCTACTGGGTTTTCTCAACCGGATGTTAATTGTGCTGCTTTAATACCTGTTTCTGGCAAGACCGCATTTGTGTTGTCACATGGCTGGATTTTATTGACGGGGTTCTCAGTTCTTATTCTTTCACTGAGTTTCAAGATTGGAAGCATCATGTATACTGATTTGTTTATGGTACCTTAG 1875 0.4795 MGPGFRFNPTDEELVVFYLKRKITGKLSRYDHIAVVDVYKLEPWDLPPLSKLKTKDLEWYFFSALDRKYGNGSRNNRATEKGYWKTTGKDRPVLQGDRRVGMKKTLVYHIGRAPHGRRTNWVMHEYKMLDEELTRAGTVLKDVFVVCRIFEKSGAGPKNGAKYGAPLDENEWDVEEENELKEVAPLPANADDPVAPLPETPQDVVTPPWEIDYGDVWGAFANGAYVEASDLDVVLISQYCCGAIIWVAISSNVVCVVLFVIVFGRGLPGDSSLEKLDLSDMNGSVTFPSSNFYYGESSTHAEHSQELIKDQEPSAVTFGISGPENGQTLDMADQYGMGTSSMNGDNGEPSEIEKLLDFKDASDDMHLDLYFDAIQNLPMADDESFLETNDLTIGNEDNPAEADPSANAMLDEYLALPADDICNYISFDYSQIPEGENSIANQGSPSTQQSVEGEPADKDVVSKHDSEAQTSNEAFSVRNAEEAKSAPGNTNPFVKQANGWLASIPAAPAHAFEFPAKEITIGLHHAAQSSHPAHITTGMISITDIAFRGSAMDWPMGKNGGFNNAISTGFSQPDVNCAALIPVSGKTAFVLSHGWILLTGFSVLILSLSFKIGSIMYTDLFMVP 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00539 624 SUPERFAMILY NAC domain 2 152 IPR036093 GO:0003677|GO:0006355
Spst10g00539 624 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 274 - -
Spst10g00539 624 Pfam No apical meristem (NAM) protein 3 127 IPR003441 GO:0003677|GO:0006355
Spst10g00539 624 MobiDBLite consensus disorder prediction 467 491 - -
Spst10g00539 624 MobiDBLite consensus disorder prediction 435 491 - -
Spst10g00539 624 FunFam Nac domain-containing protein 86 10 155 - -
Spst10g00539 624 Gene3D NAC domain 10 155 IPR036093 GO:0003677|GO:0006355
Spst10g00539 624 ProSiteProfiles NAC domain profile. 1 152 IPR003441 GO:0003677|GO:0006355
Spst10g00539 624 MobiDBLite consensus disorder prediction 435 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00539 Spst-Chr10 5407664 5410697 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00539 1 616 NAC Transcription Factor Family AT5G04410 35.110 2.03e-97 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst10g00539 NAM 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00539 - - vun:114191703 867.84