Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00536 ATGGGTCGCGAAACTGTGTTCCTTCCAGCCCCACCAACCACTGCCACCACCACAGTGAACCCAGTGGTAGCACCAACTGCACCACCTACCTCTCTTGCTCCTGGTTTCAGGTTCCACCCAACTGACGAGGAGCTTGTTATCTATTACCTCAAGCGCAAGGTTTCTGGCAAAAACTTTCGATTTGATGCTATATCTGAAGTGGATATATACAGGAGCGAGCCCTGGGACCTAGCAGACAAGTCGAGGTTGAAGACCAGAGACCAGGAGTGGTATTTTTTTAGTGCATTGGACAAGAAATATGGGAATGGTGGGAGGATGAACAGGGCTACCTGCAAAGGGTATTGGAAAGCCACTGGGAATGATAGAGCAGTGAGACATGAACAAAGGACCGTGGGTTTGAAGAAAACTTTGGTGTTTCACAGTGGGCGAGCTCCTGATGGGAAGAGGACTAATTGGGTCATGCATGAGTACAGGCTTGTTGATGAAGAGCTAGAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGAAGGATGCATATGTTTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGATATGCACCCTTTGTCGAGGAAGAGTGGGATGATGCATCGGGAATGGTTCCAGGGGCAGAGCTCATGGATAACAGCTCTATTGCCCACCAACCACGCGTTGAAGGCAACCGTGGTGTTTTGTGCGCAGAAGGGAGAAATGGTGTTGCACAGGACACTCAGTCTATCAATAGAACTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTTCTAGCTGTGTGCAAGAGGGAAAGCATGGCTGATTATCCATCTCCTGAAAAGGATGATAACAATTGTAAGCACATGGATGAGTACCCTTCACCTCAAACAGACAATCCAAAGCCTTTCTCCCAAATTTACAAACGAAGGCGGCAGCATAACTCGAACTCCAACCACAATGTGTCTGGAGATTCGATCCGAACCAGCCAGGACCCGTGCTCCTCCACAATAACTACTGCCGCAACCGCACTCCCAACCACCATTGCTGGTGCCACTACCACCAACACTGCACCGAAAAAACATTTTCTGTCTGCACTGGTGGAGTTTTCCCTGCAAGAGTCCCTTGAATCTAAGGAGAGTCTTGCTTCGATTAAGGCACCAGATTTTGACGCGGAAATCCCCGAGTCATCCATGCCTCCAAGCTGTGCTAAGTTCATCAAGAACTTGCAGAACGAGATGCATAAGCTTACAGTTGAAAAGGAGACGATGAGGTTTGAGATGATGAGCGCTCAAGCGATGATTAACATTCTCCAGTCTCGCGTCGACGTTCTGAGCAAAGAAAATGAGGAGTTGAAGAGGATGGCCCAAAATCCTTAG 1392 0.4799 MGRETVFLPAPPTTATTTVNPVVAPTAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKNFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATCKGYWKATGNDRAVRHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERAGTGSSQPQKDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASGMVPGAELMDNSSIAHQPRVEGNRGVLCAEGRNGVAQDTQSINRTPFDVNKLPIETQNLLAVCKRESMADYPSPEKDDNNCKHMDEYPSPQTDNPKPFSQIYKRRRQHNSNSNHNVSGDSIRTSQDPCSSTITTAATALPTTIAGATTTNTAPKKHFLSALVEFSLQESLESKESLASIKAPDFDAEIPESSMPPSCAKFIKNLQNEMHKLTVEKETMRFEMMSAQAMINILQSRVDVLSKENEELKRMAQNP 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00536 463 Coils Coil 439 459 - -
Spst10g00536 463 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 31 317 - -
Spst10g00536 463 Coils Coil 411 431 - -
Spst10g00536 463 MobiDBLite consensus disorder prediction 279 338 - -
Spst10g00536 463 MobiDBLite consensus disorder prediction 279 294 - -
Spst10g00536 463 MobiDBLite consensus disorder prediction 321 338 - -
Spst10g00536 463 Pfam No apical meristem (NAM) protein 34 159 IPR003441 GO:0003677|GO:0006355
Spst10g00536 463 ProSiteProfiles NAC domain profile. 32 187 IPR003441 GO:0003677|GO:0006355
Spst10g00536 463 FunFam Nac domain-containing protein 86 41 190 - -
Spst10g00536 463 Gene3D NAC domain 41 190 IPR036093 GO:0003677|GO:0006355
Spst10g00536 463 SUPERFAMILY NAC domain 26 188 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00536 Spst-Chr10 5379084 5387873 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00536 1 458 NAC Transcription Factor Family AT3G10480 43.297 3.25e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst10g00536 NAM 3.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00536 - - gmx:100808783 761.525