Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00532 ATGGAAACACCAGAGGAACTTTCTCTGGGGGGGTCCAAAGATCACACCAACATTGTCAAGGGGAAAAGAACCAAAAGGGTCAGGCCACAATCCCCTATCCCCTTCTCCATCACTGCCAATTCCTCCACCGGAGATGGAGAAAGAGAAGATTGCTACAATGTTGATGACAACACCAACACCACCATCAACAAAAATGATGATTTTAATAATAATAACAGCTCTCCCACCACATCTTCTGCAGGATTACAAGACAGCACAGATGAAGAGGAGGACATGGCCAATTGCCTCATCCTTTTAGCACAAGGACAATCCCGGGAATCTCCTAGACATGCCGAGGAAGATGTGGGCATTAACTACGCCAAGTACAGCAGTAGAAAATTCTTGGAAGCGGCCACCCTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACATGCAACAGAACTTTCCCTTCGTTTCAAGCACTTGGAGGCCACAGGGCCAGTCACAAGAAGCCTAAGGCAATGATGGCCATTGGCCAAGAGAAGAAGCAGCAACACCTTTTGTCATCAGATGAGGAAGAGTTTCAATTGAAGACCAATAATAAATCACCATTTTCCCTACAACTGAATTCGAAGGGGAATTTGTACAACAAGTCCAAGGTCCATGAGTGCTCCATCTGTGGTGCTGAATTCACATCAGGGCAGGCACTGGGAGGCCACATGAGACGCCACCGCGCCCCCGTTGGGATCCCCACCACACTCTCCTTCACCCCTTTGGCTTTGGAACCAGAAGAAGATCAGCCCAGAAAGAAAAGAAATGTGTTGAACTTGGAATTGGATCTCAACCTCCCTGCCCCTGAAGATGATCAAAGAGAATCCAAGTTTTCCTTTGCATCCAAGCAACAACAACATGGACAGAAACAACAACAGCAGCAGCAACAACCACAAACAAGTCTTGTCTTCCCTGCCCCAGCTTTGGTGGATTGTCATTACTGA 984 0.4746 METPEELSLGGSKDHTNIVKGKRTKRVRPQSPIPFSITANSSTGDGEREDCYNVDDNTNTTINKNDDFNNNNSSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPRHAEEDVGINYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAMMAIGQEKKQQHLLSSDEEEFQLKTNNKSPFSLQLNSKGNLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGIPTTLSFTPLALEPEEDQPRKKRNVLNLELDLNLPAPEDDQRESKFSFASKQQQHGQKQQQQQQQPQTSLVFPAPALVDCHY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00532 327 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Spst10g00532 327 MobiDBLite consensus disorder prediction 277 317 - -
Spst10g00532 327 SUPERFAMILY beta-beta-alpha zinc fingers 142 240 IPR036236 -
Spst10g00532 327 Gene3D Classic Zinc Finger 202 248 - -
Spst10g00532 327 Gene3D Classic Zinc Finger 122 201 - -
Spst10g00532 327 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Spst10g00532 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Spst10g00532 327 SMART c2h2final6 218 240 IPR013087 -
Spst10g00532 327 SMART c2h2final6 143 165 IPR013087 -
Spst10g00532 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 240 IPR013087 -
Spst10g00532 327 PANTHER ZINC FINGER PROTEIN ZAT5 74 302 - -
Spst10g00532 327 MobiDBLite consensus disorder prediction 31 47 - -
Spst10g00532 327 Pfam C2H2-type zinc finger 142 168 - -
Spst10g00532 327 Pfam C2H2-type zinc finger 217 243 - -
Spst10g00532 327 MobiDBLite consensus disorder prediction 292 316 - -
Spst10g00532 327 MobiDBLite consensus disorder prediction 1 87 - -
Spst10g00532 327 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00532 Spst-Chr10 5326000 5326983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00532 1 327 C2H2 Transcription Factor Family AT5G04390 44.595 6.36e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g00532 zf-C2H2_6 6.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00532 - - gmx:100799383 514.227