Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00528 ATGTTTTCTAGGTTGATACATCCCCATGAAGGGGGTGTTGGGCAGGAAGACATGCAGGGCGGTTCCAATCACGCTCACCTCGGAGACCCTTGTCTTGTTCTCACCTCTGATCCCAAACCTCGTCTTCGTTGGACCGCTGACCTCCACGAACGCTTTGTTGATGCTGTCACTCAACTTGGGGGTGCCAGTAAAGCCACTCCAAAAGCGATCATGAGGACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGACGAGGGATGCAAAGATGGGATGTCAGGTTCGTATCTTCAAGAAAGCCCTGGTACTGATAACTCATCTCCAAAGTTACCAGCTTCTGATGCAAACGAGGGTCATGAAGTCAAAGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAGGATGCAGAGCGGAGGTACATGGGCATGCTTGAGCGAGCATGTAAGATGTTGGCCGATCAATTTATTGGGGACATAATTATTGACACAGATGGCCAAAAATTTCAAGGGCTGGAAAGCAAAACACCCAGAAGTTCCCTGGTTGATCACGGTGGGTATTTTCCCCCAGTGTGTTCTGAGGTAGGTGGAATGCATGTTTCAGAAGTACCAGGTATTCTGCAGCCTCAAGGGGCTGATTGTTCCACTGAAAGTTGCCTCACATCACTTGAGAGTCTGGGTGGGTTGACACTAGAAGGATCTCCCGGCGGATCAAAGAAGAGGATGCTGAGCTTGGACTCAATGGTAGCACCTTTGATCTGGAGTGAAGCCAACACCAGAACCCAAGGAATCCATTTAGCTCAAGTCAATCCTCCAGGAATAACTAGGTATGGCATGTAG 933 0.478 MFSRLIHPHEGGVGQEDMQGGSNHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDGMSGSYLQESPGTDNSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMGMLERACKMLADQFIGDIIIDTDGQKFQGLESKTPRSSLVDHGGYFPPVCSEVGGMHVSEVPGILQPQGADCSTESCLTSLESLGGLTLEGSPGGSKKRMLSLDSMVAPLIWSEANTRTQGIHLAQVNPPGITRYGM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00528 310 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Spst10g00528 310 FunFam Myb family transcription factor 38 96 - -
Spst10g00528 310 Pfam Myb-like DNA-binding domain 42 92 IPR001005 -
Spst10g00528 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 39 94 IPR006447 GO:0003677
Spst10g00528 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 96 IPR017930 -
Spst10g00528 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 209 IPR044848 GO:0003700
Spst10g00528 310 Gene3D - 38 96 - -
Spst10g00528 310 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Spst10g00528 310 MobiDBLite consensus disorder prediction 1 24 - -
Spst10g00528 310 MobiDBLite consensus disorder prediction 113 129 - -
Spst10g00528 310 MobiDBLite consensus disorder prediction 93 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00528 Spst-Chr10 5307871 5311142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00528 8 254 G2-like Transcription Factor Family AT3G24120 45.946 1.21e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst10g00528 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00528 - - vum:124825518 581.252