Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00519 ATGCTTCTTTCTATGGGGCCTCTCTTGCTGCTTCTATGTTTTTGTACGTTGTTATATGCTGCTTCTGCCTTGAATTCTGATGGGTTGGCATTGCTGTCCCTCTCCAGGGACTGGACTGTTGGGTCCGTTGACATAAACTCCACATGGAAGTTGTCTGATTCCACTCCATGCTCGTGGGCAGGAGTGCATTGTGATCATGCCGGTAATGTGGATTCTCTGAACCTCAGTAGATATTCCATTTCTGGCCAATTAGGTCCTGATCTTGGACGTTTGAATAACTTGCAAACCATAGACTTGTCATATAATAATCTCTCTGGAAAAATCCCCCCAGAATTAAACAACTGTAGCATGCTTGAGTACATAGACCTTACTGTAAACAACTTTAGTGGAGGAATACCAGATATCTTCAGAAACTTACAAGATTTGAAGTACATGGATCTCTCAGTTAACCTGCTGAGTGGTGAGATTCCTAAATCCTTGTTGGAAATTCCTCTCCTGGAAGTAGTGTATCTTAGTAACAACAGTTTAAGTGGTTCTATTCCCTCGAGTATTGGGAACATCACTAACCTTGTCATACTGGATCTTTCTTATAATCAGCTGTCAGGGACTATTCCCATATCCATTGGAAATTGTAGTAAATTAGAGAATCTGTATTTGGAAAGTAATCAACTGTGGGGTGTTATTCCGGAGAGTCTAAATAATCTCAAAAATCTAATTGAGTTATATCTCAATGATAATAGTCTTGGAGGTACTATTCAATTGGGATCTGGAAATTGCAAGAAATTGTCTAGACTAAGTTTTTCTTTCAATAACTTTAGTGGGGGTATACCAGCAAGCTTGGGGAATTGTAGTGGCCTGATAGAGTTTTATGCTGCAAGGAGTAACTTAGTTGGCAGTATACCGTCAACCTTAGGCCTCTTGACCAGCCTTTCTCTTCTATTGATTTCAGAGAACCGATTTTCTGGGAAAATACCTCCACAGATTGGTAATTGCAAATCACTGGAAGAGTTGCATTTGAATTCCAATGAACTCGAAGGAGAAATTCCCAGTGAACTGGGAAACTTGAGTAAATTACGCGATCTTAGATTGTTTGAAAACCTTTTGACAGGAGAAATTCCACTTGGCATATGGAAAATTCAAACACTTGAGCAGATCCATGTATACAGTAATAACCTTTCAGGTGAGCTACCTCTTGAGATGGCAGAACTTAAACATCTTGAGAATATCACCTTGTTTAACAACCAGTTCTCTGGAGTCATACCTCAAAGCTTAGGAATCCACAGCAGTTTGGTTGTGTTAGATTTCATGTATAATAATTTCACCGGTGCCCTCCCACCGAATCTTTGCTTTGGAAAGAAATTGATCAGGCTGAATATGGGTAGCAATCTATTTTATGGCAGCATACCTCCTGATGTTGGAAGGTGCACAACTCTTACAAGGGTAAGACTCGAGGAAAACAATTTTACTGGGGCACTTCCTGATTTTGAAACTAATCCAAATCTCTCTTACATGAGCATCAACAACAACAACATCAGTGGAGAAATTCCATCAAGTTTGGGAAACTGCACAAATCTCTCTCTTTTAGATCTATCCACGAACAACTTGACAGGTCTTGTACCCTCAGAGCTAGGAAACCTTGTGAATCTCCAGACTTTGGATCTTTCTCACAATACTTTGATAGGTCCTTTGCCACATCAACTGTCAAACTGTAACAAAATGATAAAGTTTGATGTTGGATTCAATTTCTTGAATGGTTCGTTTCCATCAAGTTTTCAGAGCTGGACTCAATTAACAACTTTAATTCTATCGGAGAATAATTTTGATGGTGGTATCCCACCTTTCTTGTCAGATTTTGAAAGGCTCAATGAGTTACGACTTGGAGGAAACATGTTTGGAGGAAACATTCCTAGATCAATTGGAGAACTGGTGGATTTGATATATGGGCTAAATCTAAGTGCTAATGGGCTGATAGGTGAGCTTCCAATTGAGATTAAAAACCTGAAGAATCTGCTAAGACTGGATCTATCTTGGAACAATTTGACAGGAAGTATACAGGTTCTTGATGAGCTCAGTTCATTATCTGAGCTCAACGTTTCATATAATTCTTTTGAAGGGCATGTGCCACAGCAGCTAACAAATTTACCAAATTCTTCTTTGTCGTTTTTGGGCAATCCTGGCCTATGTAGCTCAAATTTCACTGAAAGCAGCTATTTAAGGCCATGTGACTCAAATTCAGAAAAGTCAAAAAAGCTCAGTAAAGTTGCAACTGCGATGATAGCACTTGGATCCTTAATATCTGTTATTCTGATGCTGGGGTTAATTTATATATTTTTTATCAGAAAAATTAAGCAGGAAGTCACAATCAATGGGGAAGATGATTCCCCATCACTTCTCTATAAGGTTATGGAAGCTACAGGAAATCTAAACGATCAGTATATTATTGGAAGAGGCGGTCAGGGAGTTGTTTACAAAGCAGAACTTGGTCCAGACAATATTTTGGCTATAAAGAAGGTAGTATTTGCTAGTGATGAAGGGAAAAGCTCAAGCATGACCAGAGAAATTCAAACCCTTGGAAAGATTAGGCATCGAAATTTGGCCAAATTGGAAGGTTGCTGGTTGAGAAAAAACTATGGTCTAATTGCATACAAATACATGCCAAATGGAAGTCTGCATGATGTTTTGCATGAGAAGAGTCGATCACACGCCTTAGAGTGGAATATCCGGAATAAAATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTCCATCACGACTGTGATCCTGTCATAGTGCACAGAGACATCAAAACAACCAATATACTTCTAGATTCTGAGATGGAGCCTCATATTGCAGATTTTGGTATTGCCAAGCTATTGGATCAGCATTCTACCACCACACATTCAACATCTGTCACTGGTACACTTGGTTATATAGCACCAGAGAATGCTTATACAACAACAAAGGGTAAAGAGTCCGATGTATACAGTTATGGGGTAGTTTTGTTGGAGCTGATATCCAGAAAGAAGGCATTGGATCCATCATTTATGGAAGGAACAGATATAGTTAATTGGGCTAGATCTATCTGGGAGGAAACGGGAGTTGTTGATGAAATTGTTGATTCAGAACTGGCCGATGAAATTTCAAATTCTGATGTGATGAAACAAGTTACAAAGGTGCTTTTGGTGGCTTTCAGATGTACATCAATGGATCCACGCAGCAGACCTGCGATGAGGGATGTTATCAAATATTTGTATGTAGATGCTAAAAACTCCACGTAA 3279 0.3925 MLLSMGPLLLLLCFCTLLYAASALNSDGLALLSLSRDWTVGSVDINSTWKLSDSTPCSWAGVHCDHAGNVDSLNLSRYSISGQLGPDLGRLNNLQTIDLSYNNLSGKIPPELNNCSMLEYIDLTVNNFSGGIPDIFRNLQDLKYMDLSVNLLSGEIPKSLLEIPLLEVVYLSNNSLSGSIPSSIGNITNLVILDLSYNQLSGTIPISIGNCSKLENLYLESNQLWGVIPESLNNLKNLIELYLNDNSLGGTIQLGSGNCKKLSRLSFSFNNFSGGIPASLGNCSGLIEFYAARSNLVGSIPSTLGLLTSLSLLLISENRFSGKIPPQIGNCKSLEELHLNSNELEGEIPSELGNLSKLRDLRLFENLLTGEIPLGIWKIQTLEQIHVYSNNLSGELPLEMAELKHLENITLFNNQFSGVIPQSLGIHSSLVVLDFMYNNFTGALPPNLCFGKKLIRLNMGSNLFYGSIPPDVGRCTTLTRVRLEENNFTGALPDFETNPNLSYMSINNNNISGEIPSSLGNCTNLSLLDLSTNNLTGLVPSELGNLVNLQTLDLSHNTLIGPLPHQLSNCNKMIKFDVGFNFLNGSFPSSFQSWTQLTTLILSENNFDGGIPPFLSDFERLNELRLGGNMFGGNIPRSIGELVDLIYGLNLSANGLIGELPIEIKNLKNLLRLDLSWNNLTGSIQVLDELSSLSELNVSYNSFEGHVPQQLTNLPNSSLSFLGNPGLCSSNFTESSYLRPCDSNSEKSKKLSKVATAMIALGSLISVILMLGLIYIFFIRKIKQEVTINGEDDSPSLLYKVMEATGNLNDQYIIGRGGQGVVYKAELGPDNILAIKKVVFASDEGKSSSMTREIQTLGKIRHRNLAKLEGCWLRKNYGLIAYKYMPNGSLHDVLHEKSRSHALEWNIRNKIAVGIAHGLAYLHHDCDPVIVHRDIKTTNILLDSEMEPHIADFGIAKLLDQHSTTTHSTSVTGTLGYIAPENAYTTTKGKESDVYSYGVVLLELISRKKALDPSFMEGTDIVNWARSIWEETGVVDEIVDSELADEISNSDVMKQVTKVLLVAFRCTSMDPRSRPAMRDVIKYLYVDAKNST 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00519 1092 Pfam Protein kinase domain 812 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00519 1092 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 776 884 - -
Spst10g00519 1092 Gene3D Ribonuclease Inhibitor 183 309 IPR032675 -
Spst10g00519 1092 Gene3D Ribonuclease Inhibitor 310 474 IPR032675 -
Spst10g00519 1092 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 69 160 - -
Spst10g00519 1092 Gene3D Transferase(Phosphotransferase) domain 1 885 1091 - -
Spst10g00519 1092 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Spst10g00519 1092 ProSiteProfiles Protein kinase domain profile. 808 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00519 1092 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Spst10g00519 1092 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 411 741 - -
Spst10g00519 1092 ProSiteProfiles Leucine-rich repeat profile. 669 691 IPR001611 GO:0005515
Spst10g00519 1092 FunFam Serine/threonine-protein kinase-like protein CCR4 885 1092 - -
Spst10g00519 1092 SMART LRR_typ_2 91 115 IPR003591 -
Spst10g00519 1092 SMART LRR_typ_2 546 570 IPR003591 -
Spst10g00519 1092 SMART LRR_typ_2 667 689 IPR003591 -
Spst10g00519 1092 SMART LRR_typ_2 307 331 IPR003591 -
Spst10g00519 1092 SMART LRR_typ_2 522 545 IPR003591 -
Spst10g00519 1092 SMART LRR_typ_2 187 211 IPR003591 -
Spst10g00519 1092 SMART LRR_typ_2 690 714 IPR003591 -
Spst10g00519 1092 SMART LRR_typ_2 235 259 IPR003591 -
Spst10g00519 1092 SMART LRR_typ_2 332 355 IPR003591 -
Spst10g00519 1092 SMART LRR_sd22_2 187 219 - -
Spst10g00519 1092 SMART LRR_sd22_2 91 123 - -
Spst10g00519 1092 SMART LRR_sd22_2 546 572 - -
Spst10g00519 1092 SMART LRR_sd22_2 235 267 - -
Spst10g00519 1092 SMART LRR_sd22_2 667 692 - -
Spst10g00519 1092 Gene3D Ribonuclease Inhibitor 494 750 IPR032675 -
Spst10g00519 1092 Pfam Leucine rich repeat 499 559 IPR001611 GO:0005515
Spst10g00519 1092 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Spst10g00519 1092 SUPERFAMILY RNI-like 72 558 - -
Spst10g00519 1092 ProSiteProfiles Leucine-rich repeat profile. 93 115 IPR001611 GO:0005515
Spst10g00519 1092 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515
Spst10g00519 1092 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 309 400 - -
Spst10g00519 1092 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 183 308 - -
Spst10g00519 1092 Gene3D Phosphorylase Kinase; domain 1 779 884 - -
Spst10g00519 1092 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Spst10g00519 1092 SUPERFAMILY Protein kinase-like (PK-like) 798 1086 IPR011009 -
Spst10g00519 1092 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 23 182 - -
Spst10g00519 1092 SUPERFAMILY RNI-like 398 720 - -
Spst10g00519 1092 SMART serkin_6 808 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00519 1092 PRINTS Leucine-rich repeat signature 525 538 - -
Spst10g00519 1092 PRINTS Leucine-rich repeat signature 546 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00519 Spst-Chr10 5243643 5247037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00519 16 1084 Receptor kinase-like Gene Family AT1G73080 51.240 0.0 1028
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst10g00519 Pkinase 4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00519 - - gmx:100817655 1727.22