Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00518 ATGGACAATAGCACCACCAACAAAACCCATGGTTTTGATGCAGGTGGGTTCACATATGGAGTGGCGTTTGTAATTGGGTTGGTGTTCTTACTTCTCACGGTGGGTTTTGCATGTGTGCGCCTTCGCATGGCTAGAGGTCCCAACATGCTCAATATTTTGGCTGGTATCCCACCATCTCATCACACAAGAGAAGAAGATTCAGCTGAACAAGGCCTTGGCCTAAGCCTTCATCACATTGACACAAGTTTTGAAAGCTACCCGAAACTTCTGTACTCCCAAGTACAGAAGGGTTCAAGTTCAACCAACATTTCTTCTTCTAGCTGCTCCATCTGCTTAGGGGACTACAAAGAGGGTGACATGTTGAGGTTACTTCCTCACTGTGGCCATATTTTCCACCTTGCATGTGTTGATCCTTGGCTGAGGTTTCATTCAACTTGTCCCATATGTAGAAAATCTTCTCTTCAACCTTCACATAATTAA 480 0.4458 MDNSTTNKTHGFDAGGFTYGVAFVIGLVFLLLTVGFACVRLRMARGPNMLNILAGIPPSHHTREEDSAEQGLGLSLHHIDTSFESYPKLLYSQVQKGSSSTNISSSSCSICLGDYKEGDMLRLLPHCGHIFHLACVDPWLRFHSTCPICRKSSLQPSHN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00518 159 Pfam Ring finger domain 107 150 IPR001841 -
Spst10g00518 159 SMART ring_2 108 149 IPR001841 -
Spst10g00518 159 SUPERFAMILY RING/U-box 90 155 - -
Spst10g00518 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 155 IPR013083 -
Spst10g00518 159 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 155 IPR045899 -
Spst10g00518 159 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00518 Spst-Chr10 5235260 5235739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00518 15 154 C3H Transcription Factor Family AT5G06490 37.107 1.55e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00518 - - gmx:102663718 241.506