Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00517 ATGTTCTCGAGCAGTAGTTTTGGTTTCGGTTCAGAGGAGTCTGTGTTATTGCTTGTGGGCTTTATCATTCTGACCCTTGTAGTCACACTTGCTGCTTATTTGTGCTCTAGTGATATTCCAGGCACCATTCCTTCTGTGCCTGTTGGTGTCACACACTCCGACCACACCACAATCACTGTGGACCCACCTGAGCCATGCATAGATCAGAGTGTGTGCAGTTTTCCAAGTCTCCAATTTTCCAAAGCCAAATTGTGTAGTAGCACTAGCAGTAGCTCTTCAAGCTGTTCCATATGCTTGATGGATTACAAGGACTGTGATTCCTTGAGAGTGCTGCCTGCCTGTGGTCACTTCTTCCATGTCAAGTGTGTTGATCCTTGGTTGAGAATCAATTTGACCTGTCCAGTTTGTAGGACCCCAATTACCCTCTCAGATGTATGTAAAACTGTGTAA 450 0.4533 MFSSSSFGFGSEESVLLLVGFIILTLVVTLAAYLCSSDIPGTIPSVPVGVTHSDHTTITVDPPEPCIDQSVCSFPSLQFSKAKLCSSTSSSSSSCSICLMDYKDCDSLRVLPACGHFFHVKCVDPWLRINLTCPVCRTPITLSDVCKTV 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00517 149 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 140 IPR045899 -
Spst10g00517 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 145 IPR013083 -
Spst10g00517 149 SUPERFAMILY RING/U-box 88 142 - -
Spst10g00517 149 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Spst10g00517 149 Pfam Ring finger domain 94 137 IPR001841 -
Spst10g00517 149 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00517 Spst-Chr10 5233726 5235102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00517 68 138 C3H Transcription Factor Family AT5G06490 52.703 4.33e-22 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00517 - - pvu:PHAVU_007G137500g 255.758