Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00508 ATGGCAGGGAACTTCAGATTTACAATGGATCAGAAGGACATTGTTAGATTCTTGACTACAACTATTGATGGTTTTATTCAAGATCGGTTAATCAACAAAGAGCAAAGAACCCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTGTGATAAGGACAGTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACATATAACATGGAAACTAAGCTTGCAAGGCTAGATTATGCTGAGAAGATGTTGCAAGTTTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTACTACCTCTCAGCTTGGGCACACCTAAATCTATCCTACTTATGGAAGTTGAGGAACAACATTCAAAATTGTGTTTTCCATGCTCTTGAGATGTTCATTATTGACCCTTTTTTTTCGCGGATTGATTTTGCTCCTGAACTCTGGAAAAACCTGTTTCTTCCACACATGAACTCAATTGTGGGTTGGTATTCTGAGGAGAGACATAGGCTTATGATGGAAGTGATACCGGACTCTTCTGATTTGTCCTTCACAACTGATTTTGATCAATTTTTCAATGAGTCCTTGGTATTTTCTATGAGGCCACATCAATTAGAAAAATTGCAAAAGCTGGAGCAGCTTTATGCAGAATCATTGGATGAAAACACACGGCTTTACGCAAAATATTATAAAGATTGCACGAATTCTGATTCCACTTCAGGCAAGAAGGCAGCTCCTATGTTGCCTATTGCTGAGCCACCAATGACTCCTTTGCATGAGTTGAGTCGGTCTGTTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCTGGGTTTTCTTTGGCAAAAAGATCAAAAGATGGTGCAAATGAAACAATCAGAGAGAATTCAACTTCCAGTCAATCAAAGGTGGAGAAATCATCTATATGGGCTGCTAAGGGGAGAATCATTGAAGAGAATGAGAATGAAGATGATTCAGATTCTGAGCTTGACGATGCTTCCGTGGATTCAGAGAGCAAAAACAATGTTTTCTCACCAGGAATGAAGATGGTCAAGGATGAGGATATTGAGCCAAAGGCGCCTCTATCAAACCATAAGAATCAGATACATTCTCCTAATATCTTCTCTCCCTTGGATTCCCCAATAACAGGTCCAAATAATTCATCTACAAATCCTGATACAAACAGTAAAAGAGAACCCAAGTATCTTCGCTTATTGTCCACTCGTTTGAGGGACACAACTCTTTCTGACTCTTTATCATCATCTCTGGAAATGAGCACGGATCAAATTTTCAACTCTGATAAAGAAGTAACGGGATTAAAGAATATTAAGAAGAAAAACAATAACCAAACACCAAGTATGAATCATGACAATGAGAATTGCCTAGGATTTAAGGACAGTTCCCTTTGTGAAAGTGATGAGGGAAATCAAAGCTGCACTACGTTGCCAAAGTTAGAGAAGCTGACAATTGGATCAAAACCACCAAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTGGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAATGGCTCAGAACAGGTAATACGACATGCCCCATCACGAGACAGCCTCTATCTGCAAATATATTGCCCAAAACAAACTATGTTTTGAAGAGATTGATAACGTCATGGATAGAACAGAATCCTGAACTGGCGCAAGAATTCTCGAATTCTAACACACCAAGGGGTTCTTCCTGTTCTCCATCTGCAAAAGACTTTCAGATGCTCTCCATTACACAAAGAACAACTGATTCACCAAGTCTTAAGAGCAAAGAAACTTATATTAGACAAAGGAGCAACAGATTTATGCGAGTTTCTGTTGCAACATCTCCAACTAGTGTACTATCTCAAGCTGCAGTTGAAACAATTTTGAATTCCTTGAAACCTTACATTTCAAGTCTTTGTACATCAGAAAACTTGCAAGAATGTGAAGAAGCTGTAATGGAAATAGCAAGATTATGGAAAGATTCAGAGACTGATCCTCAGATTCATGCTTATTTATCTAAGCCAACTATCATAAGTGGTTTGATGGAAATACTTTCAGCTTCTCTGAATAGAGAAGTTTTAAGAACATCAATTTATATACTTTCTGAGCTGATATTTTTAGATGAAAGTGTTGGAGATACACTTAACAGTGTTGATTCTGATTTTGATTGCTTGGCTACTCTGCTTAAGAATGGTTTAGCTGAGGCTGCTCTTCTTATTTACCAACTAAGGCCCGTTTTTGCTCAGCTTTTGGTTCATGAACTTGTACCATCTCTTGTTCAAGTGATTCAGAACAAAAGTGAAGGGTCAGATAATTTTCAGTTAGTTATAGACCCCAAAGATGCTGCCATAGCAATTCTTGAGCAAATTTTAATAGGAGGGGATGAAGATAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCTGAAAATGGCATTCCATCCTTAGCGAAGTATTTGGAGAGGATGGAGGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAGATTGCAAGAGCTTGATCGCCAACAGAATTGAATTGTCTCCTGTTCTTGAATTATTTCACGCTGGAAATGATAGTGTGAGAGGCATCTGTGCGGAGTTTCTCTCAGAACTGGTTCAACTGAATAGAAGGACAGTCTGCAACCGGATATTACAGACAATCAAGGATGAAGGAGCGTTTAGTACGATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTAGCTAGTCTTCTTCTTCAGATTGATCTTCTGGTTGAGCCACGGAAGATGAGCATTTACAGGGAAGAAGCCGTAGAGACGCTTATAGAAGCACTTTGGCAAAAGGATTTCTCAAGCACTCAAATGAAGGCTTTGGATACTTTACTATTTCTTATTGGACATGTAACTACCTCCGGAATGTCATACACTGAAGTTTGGTTGCTCAAGATTGCAGGATTTGTTCAACCTTACAATGCTTTGATTAAGGCTGGACAGTTGGGACAGTATGACAATGAATCAACGGAAACAATGGAGGATGAAAAAAATGCTATGAACTCTTGGCAGAAAAGGGTAGCTTTCGTACTCTGCAACCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTGCGGAGTAATTCTTTAAAGATGGCAAAATCTTGCCTTGTTCTTGTCGCATGGCTCACACACATGCTCTCTACTCTTCCTGATACCGGCATAAAGGATGTTGCTCGCAAATCCTTGCTTGATGAACTTATAAATGTCCTGCAATCATCTAAGAACCTGGAGGAGATGATCTTGGCTAGCCTAGCCTTGAAAACTTTCATTAGTGATCCAATTACTCAAGAAGCACTTAGAGCTTATGCTAAAAGCATCTATAGAACCATGAGGAAGCTGAAGAGATATTCAACAGTAGCAGTTGATATTATGAAAGCCTTACTAAACTTAAACTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAGGAAGTTGTTGAGTTAGATTTGAGTTCAAATGGAGAGGTGCTTTCTTTGCATTACATGAACGGTCAGGTCTTGAGTGGCCACTCTGATGGAACTATCAAGGTATGGGATGCAAAAAAGAGAATACCAAGAGTGATTCAAGAAACTCATGAACATACAAAAGCTGTTACATCTCTCTGTTCTTCGGATGATAGATTATACAGTGGCTCCTTAGACAAAACCATCCGGGTTTGGATAATCAAATCGAATGAGATTAAATGTATAGATGTTCACGACGTGAAGGAGCCGGTGTATGAGCTGACAGCCAATGCCAAATTGGCATGCTATGTATCTCAAGGAAGTGGAGTTAAGGTTTTTAACTGGTCAGAGGCTCCAAAGCTCATAAATTTTAACAAATATGTGAAATGTCTAGCTGTTGCTGGAGACAAACTGTACTGTGGCTGCTCTGGTTACAGCATCCAGGAGGTTGACTTGTCCAAGAATACGTCAAGCTCATTCTTCTCTGGAACAAGAAAGTTGTTGGGAAAACAAACCGTATACTCCCTTCAAATTCATGATGATTTTCTCTTTGCTTGTGGTTCTTCTGTTGATTCAACTGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGATCACTCTCAACTGGACTGGACATCCATCGCATAGCCATTAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTAAAGGATAAGCTCACCCGGGTTGCCTCAATCAAAATGGCAGGTGGTCACACAAAGATCACATCATTGGTATCAGATACAGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4467 0.3967 MAGNFRFTMDQKDIVRFLTTTIDGFIQDRLINKEQRTQHKEQCAERLAAEDGSCDKDSEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNYYLSAWAHLNLSYLWKLRNNIQNCVFHALEMFIIDPFFSRIDFAPELWKNLFLPHMNSIVGWYSEERHRLMMEVIPDSSDLSFTTDFDQFFNESLVFSMRPHQLEKLQKLEQLYAESLDENTRLYAKYYKDCTNSDSTSGKKAAPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSAGFSLAKRSKDGANETIRENSTSSQSKVEKSSIWAAKGRIIEENENEDDSDSELDDASVDSESKNNVFSPGMKMVKDEDIEPKAPLSNHKNQIHSPNIFSPLDSPITGPNNSSTNPDTNSKREPKYLRLLSTRLRDTTLSDSLSSSLEMSTDQIFNSDKEVTGLKNIKKKNNNQTPSMNHDNENCLGFKDSSLCESDEGNQSCTTLPKLEKLTIGSKPPKDFVCPITGQIFGDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANILPKTNYVLKRLITSWIEQNPELAQEFSNSNTPRGSSCSPSAKDFQMLSITQRTTDSPSLKSKETYIRQRSNRFMRVSVATSPTSVLSQAAVETILNSLKPYISSLCTSENLQECEEAVMEIARLWKDSETDPQIHAYLSKPTIISGLMEILSASLNREVLRTSIYILSELIFLDESVGDTLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLLVHELVPSLVQVIQNKSEGSDNFQLVIDPKDAAIAILEQILIGGDEDSRSLNALSVISENGIPSLAKYLERMEGRRSVVSILLCCMQAEKDCKSLIANRIELSPVLELFHAGNDSVRGICAEFLSELVQLNRRTVCNRILQTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQIDLLVEPRKMSIYREEAVETLIEALWQKDFSSTQMKALDTLLFLIGHVTTSGMSYTEVWLLKIAGFVQPYNALIKAGQLGQYDNESTETMEDEKNAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLVAWLTHMLSTLPDTGIKDVARKSLLDELINVLQSSKNLEEMILASLALKTFISDPITQEALRAYAKSIYRTMRKLKRYSTVAVDIMKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYMNGQVLSGHSDGTIKVWDAKKRIPRVIQETHEHTKAVTSLCSSDDRLYSGSLDKTIRVWIIKSNEIKCIDVHDVKEPVYELTANAKLACYVSQGSGVKVFNWSEAPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKNTSSSFFSGTRKLLGKQTVYSLQIHDDFLFACGSSVDSTAGKIFSLSSKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKLTRVASIKMAGGHTKITSLVSDTDGMMLFVGSSDGKIQVWALD 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00508 1488 ProSiteProfiles U-box domain profile. 512 587 IPR003613 GO:0004842|GO:0016567
Spst10g00508 1488 SUPERFAMILY ARM repeat 638 1174 IPR016024 -
Spst10g00508 1488 Gene3D - 1326 1488 IPR015943 GO:0005515
Spst10g00508 1488 Pfam U-box domain 514 584 IPR003613 GO:0004842|GO:0016567
Spst10g00508 1488 Pfam WD domain, G-beta repeat 1456 1485 IPR001680 GO:0005515
Spst10g00508 1488 Pfam WD domain, G-beta repeat 1217 1235 IPR001680 GO:0005515
Spst10g00508 1488 Pfam WD domain, G-beta repeat 1248 1276 IPR001680 GO:0005515
Spst10g00508 1488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 589 IPR013083 -
Spst10g00508 1488 SMART WD40_4 1240 1277 IPR001680 GO:0005515
Spst10g00508 1488 SMART WD40_4 1445 1486 IPR001680 GO:0005515
Spst10g00508 1488 SMART WD40_4 1197 1235 IPR001680 GO:0005515
Spst10g00508 1488 CDD RING-Ubox_PUB 514 566 IPR045210 -
Spst10g00508 1488 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1487 - -
Spst10g00508 1488 SUPERFAMILY WD40 repeat-like 1215 1487 IPR036322 GO:0005515
Spst10g00508 1488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1454 1488 - -
Spst10g00508 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1247 1276 IPR001680 GO:0005515
Spst10g00508 1488 MobiDBLite consensus disorder prediction 311 326 - -
Spst10g00508 1488 MobiDBLite consensus disorder prediction 383 415 - -
Spst10g00508 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1222 1235 IPR001680 GO:0005515
Spst10g00508 1488 SUPERFAMILY RING/U-box 512 585 - -
Spst10g00508 1488 Gene3D - 1190 1325 IPR015943 GO:0005515
Spst10g00508 1488 Gene3D - 641 1032 IPR011989 -
Spst10g00508 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1454 1488 IPR001680 GO:0005515
Spst10g00508 1488 Coils Coil 225 245 - -
Spst10g00508 1488 MobiDBLite consensus disorder prediction 302 419 - -
Spst10g00508 1488 SMART Ubox_2 516 580 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00508 Spst-Chr10 5175716 5182531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00508 503 895 U-box Gene Family AT1G23030 25.672 2.63e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00508 - - gmx:100776142 2592.76