Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00505 ATGGCCACAGAAGAAGAAATTTCGACTTTGAAACTGTTGCGCCAATATCTCTTGGGGGATATTTCAGACCCTTTTCTCACCAACCTCATTCCTGTAAAAGTTGAAGACCCATCATCAGAACTTGATTTGGGTTCAAACTTCTCAGAGCAAAGCAGCTTCTGCAGGTTTCTAGAATGCTTTGATTTTAAAGCAGACAAGGAAGTGGTAGGTCTCACTTCTCATGATAAAATCCAAAACTCCATTTCAGCAAGTCCTCCCCAGAATTCTGATTTGGCAGAAGCAATGGTGTCAGTGAAAAGGGAAGCAACATGTTGTTCCGAGGCAAGGCGTTACAGAGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCTGCAGAGATCCGTGACCCCAGAAGGAAAGGGAACAGGGTGTGGCTAGGCACATATGACAGTGAGATTGATGCTGCTAAGGCTTATGATTGTGCTGCCTTCAGAATGAGGGGTCAGAAGGCTGTTTTGAATTTCCCCTTGGAGGCTGGAAAGTCTCATCCAGAGCCCAACACTTGTGGCAGAAAAAGGAGAAGAGAGTGCACAGCAGCTCCCACAACTTCAAGTCATTTTATGTCATGA 606 0.4587 MATEEEISTLKLLRQYLLGDISDPFLTNLIPVKVEDPSSELDLGSNFSEQSSFCRFLECFDFKADKEVVGLTSHDKIQNSISASPPQNSDLAEAMVSVKREATCCSEARRYRGVRRRPWGKFAAEIRDPRRKGNRVWLGTYDSEIDAAKAYDCAAFRMRGQKAVLNFPLEAGKSHPEPNTCGRKRRRECTAAPTTSSHFMS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00505 201 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Spst10g00505 201 FunFam Ethylene-responsive transcription factor 2 109 170 - -
Spst10g00505 201 PANTHER DNA-BINDING DOMAIN 85 178 IPR044808 GO:0003700|GO:0009873
Spst10g00505 201 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
Spst10g00505 201 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Spst10g00505 201 PRINTS Ethylene responsive element binding protein signature 150 170 IPR001471 GO:0003700|GO:0006355
Spst10g00505 201 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Spst10g00505 201 MobiDBLite consensus disorder prediction 177 191 - -
Spst10g00505 201 CDD AP2 118 168 IPR001471 GO:0003700|GO:0006355
Spst10g00505 201 SUPERFAMILY DNA-binding domain 110 170 IPR016177 GO:0003677
Spst10g00505 201 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Spst10g00505 201 MobiDBLite consensus disorder prediction 175 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00505 Spst-Chr10 5121098 5121703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00505 107 187 AP2-EREBP Transcription Factor Family AT5G07580 71.605 5.05e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst10g00505 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00505 - - pvu:PHAVU_007G135900g 352.829