Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00500 ATGGCTATGAAGAAACTCATTCAACTAATTCTTGTTACCCTAATAGCATCAAAAGCAGCACCTCAACCCTCTTCAGATTGCCCCAAAAGCTGTGGCAATCTAAACATTCCTTACCCTTTTGGGACAGGCGAGGGTTGTTACATGAACGACACTTTTCTCATCACTTGCTACCATGATAATAACTCCTCCAAGTTCATTCCTTTGTTGGGAAGAAGCAACGTAGTGGTGCTCAACATATCACTAGAAGATGGGGAAATTCTAGTTTCAAGTCCCATAATCCATGACTGCTATGGCACCACAAACAATAGTTCAGAGAACCAAAATGGTCTCAATCTCACCCACTTTTCAATCTCGCCAACTAGGAACAAATTCACAGCACTTGGTTGTGACACGGTTGGAGTATTCATGGGTTACGATAGCAGCAAAAAACATGTTGCAACAACAGGGTGTGTATCCATATGTGACACAGTTAGTGAAATCAAAAGTAATGGATCATGCGATGGCATTGGCTGTTGCCAAATTGGTGTTCCTAGTGGAGTACATGGTTTTGCAATGCAAAGTTGGAGTATGAACAACCACTCCACCGTACGTGACTTCAATCCCTGTAACTATGCGTTTACGGTCGCTGAAGGGTATTACAAGTTCGAAACAGGAAACCTTAGGAGGCTCGAGAATACGACGTTGCCCTTGGTCCTTGATTGGGGTGTGGGAAATGAAACCTGCGAAGAGGCCCGACAACATCCTAGTAGCTATGCTTGCAAGGATAAGAACAGTGATTGCCTCCATCCAACAAATGGGATTGGTTATCGTTGCAGATGCCATCATGGTGGAAACCCTTACCTCCACGATGGTTGCCATGATAGTGATGTATGCGGTTTGAACACCAATCCCTGCATCTACAAGAAAAGCTGCAAAATCGTCCCTGGAGGAGGTTATAAGTGCTCATGTTCAAAGAGCCACGAAGAAGGAGATGGATTGAAAAATGGCCAAGGTTGCAGACCCAAAAAAGACAAATACATAGATAATCTCATACTTATAATTGGATTGAGTTTGAGCTTAAGTCTATTGGCAGTGGTTGTGGGATGCTTAAACATATACCCCCAGATCCGTGAAAGAAAGCTCATGAAAATGAGAGACAACTATTTTCTAAAAAATGGTGGTATGTTATTGCAAGGAAAGATTGATTCACTCAATGGCTCAACTGAAAGAGCCACAATTTTCACTGTTGAGGAGCTCAAGAAAGCCACCAACAACTATGATGATGCTGGAATCATTGGCAAAGGAGGCCACGGAACTGTGTACAAAGGTATATTATCAAATGGCAGGGTTGTTGCCATCAAGAAGTCCATGGTATCCAACCAAACTGAGATTGAGCAATTCATCAACGAAGTGGTTGTGCTTTCCCAAATCAACCATAGGAATGTTGTCAAACTACTAGGTTGTTGTTTGGAGACAGAGTTTCCCTTACTTGTTTATGAGTTCATCACTAATGGTACCCTTTGTGAGCATCTACATTTTGAAGGTGAAGCATGTGAAGATAAGCACAAACTTTCGTGGACAGCACGTTTGAGAATTGCAGCAGACACAGCAGAGGCTCTTGCATACTTGCATTATTCTGTTTCCACACCAATCATTCATAGAGATGTTAAAACTGCAAACATTCTTCTTGATGACAACCTCACAGCCAAGGTTTCTGACTTTGGGGCTTCAAAGCTTGTTCCTCTTGATCAAACCCAGTTAACCACTTTGGTGCAAGGAACAATGGGTTACCTTGACCCTGAGTACTTCCAAACAAGCCAACTAACCGAGAAGAGTGATGTTTACAGCTTTGGTGTTGTCCTTGCAGAACTATTGACAAGCAAGAAGGCAATTTCATTTTTCAGGCCTCAGACTCAGAGAAATCTGTCTATGTATTTTGTTTCTACAATGAATGAGGGTCGGTTGGATCAAATATTGGACAAGGAAATTGTGAGTGATGCAAGTGTTGAGTATGTAATAGAAGTTGCCAATCTAGCCAAAAGGTGTCTTAGGCTGAAAGGAGAAGAAAGACCAAGCATGAAAGAAGTGGCAATGGAGTTGGAGGGAATAAGGGTCATGGAAAAACATTCACTAGGAGTAGCAAAAGATGTTGCATCCCAAGAAGAAACAGAGAGCTTTCTCAAAGAACGTTCTCACTTTAACATTGTTGATCATGGAGATGGTACTAGTGGTAGTAGCAGTACAATTTCTAGGTTCTATAATTTGCATAATCAGATTTTGGAACCACTAGGGAATGGACGATAG 2283 0.4192 MAMKKLIQLILVTLIASKAAPQPSSDCPKSCGNLNIPYPFGTGEGCYMNDTFLITCYHDNNSSKFIPLLGRSNVVVLNISLEDGEILVSSPIIHDCYGTTNNSSENQNGLNLTHFSISPTRNKFTALGCDTVGVFMGYDSSKKHVATTGCVSICDTVSEIKSNGSCDGIGCCQIGVPSGVHGFAMQSWSMNNHSTVRDFNPCNYAFTVAEGYYKFETGNLRRLENTTLPLVLDWGVGNETCEEARQHPSSYACKDKNSDCLHPTNGIGYRCRCHHGGNPYLHDGCHDSDVCGLNTNPCIYKKSCKIVPGGGYKCSCSKSHEEGDGLKNGQGCRPKKDKYIDNLILIIGLSLSLSLLAVVVGCLNIYPQIRERKLMKMRDNYFLKNGGMLLQGKIDSLNGSTERATIFTVEELKKATNNYDDAGIIGKGGHGTVYKGILSNGRVVAIKKSMVSNQTEIEQFINEVVVLSQINHRNVVKLLGCCLETEFPLLVYEFITNGTLCEHLHFEGEACEDKHKLSWTARLRIAADTAEALAYLHYSVSTPIIHRDVKTANILLDDNLTAKVSDFGASKLVPLDQTQLTTLVQGTMGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTSKKAISFFRPQTQRNLSMYFVSTMNEGRLDQILDKEIVSDASVEYVIEVANLAKRCLRLKGEERPSMKEVAMELEGIRVMEKHSLGVAKDVASQEETESFLKERSHFNIVDHGDGTSGSSSTISRFYNLHNQILEPLGNGR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00500 760 SMART serkin_6 419 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00500 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672|GO:0006468
Spst10g00500 760 FunFam Wall-associated receptor kinase 2 389 494 - -
Spst10g00500 760 ProSitePatterns Protein kinases ATP-binding region signature. 425 448 IPR017441 GO:0005524
Spst10g00500 760 ProSiteProfiles Protein kinase domain profile. 419 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00500 760 Gene3D Transferase(Phosphotransferase) domain 1 495 718 - -
Spst10g00500 760 SUPERFAMILY Protein kinase-like (PK-like) 402 694 IPR011009 -
Spst10g00500 760 Gene3D Phosphorylase Kinase; domain 1 389 494 - -
Spst10g00500 760 Pfam Protein kinase domain 420 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00500 760 FunFam Wall-associated receptor kinase 2 495 758 - -
Spst10g00500 760 Pfam Wall-associated receptor kinase galacturonan-binding 27 88 IPR025287 GO:0030247
Spst10g00500 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 16 707 IPR045274 GO:0007166
Spst10g00500 760 CDD STKc_IRAK 425 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00500 Spst-Chr10 5094973 5098448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00500 6 698 Receptor kinase-like Gene Family AT1G21230 43.509 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Spst10g00500 Pkinase 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00500 - - vun:114190859 1249.57