Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00497 ATGGCAACAGGATCAAAGTTTTTGGACAATGCAATGATAGGAGGTTCTCACTCTCTCACTGCCTCCAACCATCTTCATGTGTTAAGAAGTGGGGCAATGAAAGAAGAGGCACCTGTAGCCACATGGATTGGTCATATCCCTGCAAAGTTCAATGGTTCTGAAGACATAAAAAATGGCAGAGAGAAAAACCAACCCAATTCTGTCTTCCCAGCCTCAGATATAAAAAACAGCTCCATTCCTCTGAATCTTTTGGAAACTCTCCCACCATTAACTATGGCACCGTGTTTTGATGAGTCAGTTGCTTCTTTAGCATCTTCTTCTGCCACACCCAATTTTCCAAACTTGACTTTGTTTTTGCAGGAACCCTCATTGGTGTACTCATCATCCTCAAATATCAAAGGTGGTGAAGTCATATCAGTAACTTCAGACCCCGCATATCAAGTGCCTCACTTTGGCCAAAACCAGCATCAAGCACATCAAGCAGGTGGTGGTGATGCACACAACATAAACAAGAACCTAACAAATTCTCGGTCCAAGTCTTTCAGTGAGAATTGGTTGGGTACCACTAGGACTCAGCCTATGAAGTTTGGTGGAAGAGGGAAGCTGTTTAAAGGGGTGAGGCAGAGACACTGGGGAAAATGGGTTGCTGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTAAGAGGAGAATATGCTCAGTTGAACTTCCCAGATCTCAAGCATGTAATCCAGGCCAATTCTCTGAATGGAACCACTGCTGCACTTGTGGAGGCAAAACTACAAGCAATATCACAAGGTGATTCTTCTCATAGGAAGCCCACTGACACACCAGCAGGGTCAAGCAACAAGCACACTGATGAGAATGGCAAATTGAAAAGTACAAATGGTAAGGATTCAACCATGAAGGAGTGGCAGTTTGATACTGAAAGAAGCAAAAGTACACACCATGAGACATCAGATGTGGAAACGGTCCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATGATTTGGGATGAACTTTTAGTCTCTAATTCATGA 1107 0.4354 MATGSKFLDNAMIGGSHSLTASNHLHVLRSGAMKEEAPVATWIGHIPAKFNGSEDIKNGREKNQPNSVFPASDIKNSSIPLNLLETLPPLTMAPCFDESVASLASSSATPNFPNLTLFLQEPSLVYSSSSNIKGGEVISVTSDPAYQVPHFGQNQHQAHQAGGGDAHNINKNLTNSRSKSFSENWLGTTRTQPMKFGGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGDSSHRKPTDTPAGSSNKHTDENGKLKSTNGKDSTMKEWQFDTERSKSTHHETSDVETVQLSRMPSLDMDMIWDELLVSNS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00497 368 ProSiteProfiles AP2/ERF domain profile. 202 259 IPR001471 GO:0003700|GO:0006355
Spst10g00497 368 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 81 363 - -
Spst10g00497 368 MobiDBLite consensus disorder prediction 155 175 - -
Spst10g00497 368 Gene3D AP2/ERF domain 202 260 IPR036955 GO:0003700|GO:0006355
Spst10g00497 368 MobiDBLite consensus disorder prediction 286 306 - -
Spst10g00497 368 MobiDBLite consensus disorder prediction 307 344 - -
Spst10g00497 368 CDD AP2 201 261 IPR001471 GO:0003700|GO:0006355
Spst10g00497 368 SUPERFAMILY DNA-binding domain 202 260 IPR016177 GO:0003677
Spst10g00497 368 MobiDBLite consensus disorder prediction 286 346 - -
Spst10g00497 368 FunFam Ethylene-responsive transcription factor 2 201 260 - -
Spst10g00497 368 Pfam AP2 domain 203 251 IPR001471 GO:0003700|GO:0006355
Spst10g00497 368 SMART rav1_2 202 265 IPR001471 GO:0003700|GO:0006355
Spst10g00497 368 PRINTS Ethylene responsive element binding protein signature 203 214 IPR001471 GO:0003700|GO:0006355
Spst10g00497 368 PRINTS Ethylene responsive element binding protein signature 225 241 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00497 Spst-Chr10 5085440 5086546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00497 113 363 AP2-EREBP Transcription Factor Family AT4G13620 48.649 6.25e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst10g00497 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00497 - - gmx:100820013 583.563