Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00478 ATGTCGGATGCGCCAACGAGCCCGAGTCACGAGAGTGGGGGCGAGCAGAGCCCTCGCGGTTCGTCGTCTGGTGCCAGGGAGCAGGACCGCTACCTTCCTATTGCCAACATCAGCCGCATCATGAAGAAGGGTCTGCCTCCCAATGGCAAGATCGCTAAGGACGCCAAAGATACCATGCAAGAATGTGTTTCTGAGTTCATCAGCTTCATCACCAGCGAGGCGAGTGAGAAATGCCAGAAAGAGAAAAGAAAGACCATTAATGGAGACGATTTGTTATGGGCAATGGCTACTTTAGGTTTTGAAGACTACATAGAGCCGCTTAAGGTGTACCTAGCAAGGTACAGAGAGGGTGACACTAAAGGATCTACTAGAGGTGGGGATGGATCTGCTAGACCAGATCAAGTTGGCCATGCAGGTCAAAATTCTCAGCTTGTTCATCAGGGTTCACTGAACTATATTAGTTTGCAGGTGCAACCACAACATTTGCTTCCGTTGGAGGCGAGGAGAAAAATATACTGGTCTAACCTGCAAAATCACTTGGACAAACTCAGTCAGCAGAGTAAAAATGCACTGAAACATGTGCTTACCTAG 591 0.4856 MSDAPTSPSHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKGLPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGDTKGSTRGGDGSARPDQVGHAGQNSQLVHQGSLNYISLQVQPQHLLPLEARRKIYWSNLQNHLDKLSQQSKNALKHVLT 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00478 196 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst10g00478 196 MobiDBLite consensus disorder prediction 118 139 - -
Spst10g00478 196 SUPERFAMILY Histone-fold 28 125 IPR009072 GO:0046982
Spst10g00478 196 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst10g00478 196 Gene3D Histone, subunit A 18 149 IPR009072 GO:0046982
Spst10g00478 196 MobiDBLite consensus disorder prediction 1 30 - -
Spst10g00478 196 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Spst10g00478 196 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Spst10g00478 196 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Spst10g00478 196 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Spst10g00478 196 MobiDBLite consensus disorder prediction 1 24 - -
Spst10g00478 196 FunFam Nuclear factor Y, subunit B1 21 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00478 Spst-Chr10 4956468 4961467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00478 9 165 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.875 4.38e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst10g00478 CBFD_NFYB_HMF 3.2e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00478 K08065 - gmx:100779577 306.99