Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00465 ATGGCAGGAAACATGGGGTGGGGTGTAATAGAGGAGGAGGGATGGAGGAAGGGTCCTTGGACTGCTGAAGAGGACAGATTGCTCATTCAGTATGTCAGACTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGACTGAAAAGAAATGGAAAGAGCTGCAGACTGAGATGGGTGAATTACCTGAGACCAGACCTCAAAAAGGGTCAGATAACACCACAAGAAGAAAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATCAAGAATTATTGGAGGACCCATTTCAAGAAGAAGACTAAAAGCCCCTCTGATGCTGCTGAGAAGGCTAGAATCCGTTCCTCTAGGAGGCAGCAATTTCAACAGCAACAACTGCAGTTGAAGCATCAGCAGCAGGTTCAGCAGCAGCAGCAACAACAATTCCAATTCAACTTGGACATCAAAGGGATCATAAACTTGCTTGAGGAAAATGACCATAGAGTCCCTTCTACATCTCAAGAGACACAAGAAATGGTTAACATGTATCCAAACACTTCAGAGCAGCAGGGTTATTTCTACTCTATGTTCAATGCCAATGACAATGTCTCTGCACCAGAGTCATCAAACGAAGAAATTCTGTGGGATGGACTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCTAATGCTACAAGCAAAGCTAGTTTACACAATTTAGTTGCTCCTTTCAGTTAA 777 0.444 MAGNMGWGVIEEEGWRKGPWTAEEDRLLIQYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSPSDAAEKARIRSSRRQQFQQQQLQLKHQQQVQQQQQQQFQFNLDIKGIINLLEENDHRVPSTSQETQEMVNMYPNTSEQQGYFYSMFNANDNVSAPESSNEEILWDGLWNLDDVLCNFNAANATSKASLHNLVAPFS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00465 258 CDD SANT 74 115 IPR001005 -
Spst10g00465 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Spst10g00465 258 Gene3D - 17 69 - -
Spst10g00465 258 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Spst10g00465 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Spst10g00465 258 FunFam Myb transcription factor 17 69 - -
Spst10g00465 258 CDD SANT 19 64 IPR001005 -
Spst10g00465 258 Gene3D - 74 118 - -
Spst10g00465 258 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Spst10g00465 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 231 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst10g00465 258 FunFam MYB-related transcription factor 74 118 - -
Spst10g00465 258 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Spst10g00465 258 SMART sant 16 66 IPR001005 -
Spst10g00465 258 SMART sant 69 117 IPR001005 -
Spst10g00465 258 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Spst10g00465 258 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00465 Spst-Chr10 4835462 4836580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00465 12 258 MYB Transcription Factor Family AT3G24310 55.390 2.03e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst10g00465 Myb_DNA-binding 7.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00465 K09422 - gmx:100782089 450.284