Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00450 ATGCATTCCTTCAGAGACAAAGTTACACAGAAGCTCTCCCATCTCTTTCCCAACTCCTCCTCGCCCCAGAATTATGTTTTATGGCTTGTGTACATGACTGACGTTAAAGGACGCCAATGGGTCTTACTTTATAGTACGTTAAAACATGGAGTATCACTCCGAACACTTATCCGCAAGAGTGCCGAGCTTTCTTGTCCTGGTTTACTGATTGTGGGAGATATGCAAGGTGCTGTGTTTGGTGGGCTGTTAGACTGTCCCTTGAAACCTACAGCAAAGCGAAAATATCAAGGAACAAACCAAACTTTTGTCTTTACAACTGTATATGGTCAGCCAAGGCTGTTTCTACCTACTGGTCTCAACCGATACTACTACATGTGTATGAGCGACTTACTTGTACTTGGTGGTGGGGGTAATTATGCTTTATGCTTAGAAGAAGATTTGTTATCTGGAACTAGTGGGCCTAGTGAAACATTTGGAAACTCATGTCTAGCTCATAGCCCAGAGTTTAAGTTGAAGAATGTCGAGTATAAAAGTTATGAGTCCAGTCTCCTTTGTGGGGTTTTGCACATGCTTCCCCTTTTCAAGGCTAAGATGCTTTTGTTTGATGTCCAAAAGAAGCGTCTCTCTTCTACTTCTCTTTGGATGGGTTACACCATGTTGCAGGATGTTTTTGATCAGCCACTGCCACCAAAGGCCGAACAGCAACAGCAACTCCCCATTGATGAAATTTCAAGCCCTCTTAGTGCTCGAATTTTCGAACTATGTAACGCTGAATTTTTCCCAGAAGCTTTGCCAAATTCTGAGGTTACTTCCAGCTCAAACTGTTGCTATGAGGAGAACTCCTCATATGCCGCAACAAACATATCTTTAACTGTAGATGTAGAAAATAAGTTGAATAACAATGGCAACACCGTCACCACGCCAACTAGCACCACCACTACCACCACCAACAACAACACAACCAACAGTAGTAACCTGTCTATTATATTTGACTCCCAAGAAGAAATTGATAATGACATCTCTGCCTCCATAGACTTCTCGCTATCTCCATCTTTCAATGCTCCCCCATTTCTCCCAGTCACATCCCAGCAAGAACAGTTTGATTTCTCTTCTGTGCAGCCTCAGGTCCAATTACCAGCATGTTCAGTTGTGGAGGGCTTCTCTCAGTATACCACTGACTCCGTTGCACCACCTCTCATGGGAGCTCCATTACCTTCTGTTTTTGAAGAGGATTGCATATCTTCTGTCCCTTCTTATGTTCCTCTCAACCCTTCATCTCCTTGCACTTATCTCAGTCCTGGCATGCCACCGTACATGACTCCCGGCCCCCTTACTACTGCCTTATCAACTGATAGTTCTGGATTTTTTGGTGGGAACATTCTTCTTGGTTCTGAACTTCAGACACAAGAATTGGAATACCAAGGAGAAAATGGAAGAATATATTGTACAGATTCAATTCAGCGAGTGTTTAACCCTCCAGACCTTCAGGCACTTGGCACTGAGAGTCAGCAACTAATTCCCGGGGGTGGTAGTTCTGCCACTCTAACACCTGAAATCTCAAACTTAGAGGATTCCTCATTCAAGGTTGGAAAACTTTCTGTAGAGCAAAGGAAAGAAAAGATCAATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTAGAGGAAGGTTTGCAAAGAACGATGACTTTGGCGAAACCAATAGAACTACTAGTAGCAATCATGAAGATGATGATGAAGAAGAAGTAGTTGTGAAAGATGAAGATGATATGGTTGACTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATACAACTATTCCATCCATGAGGAACTAGTGTTGGCTAAATTGAAGGGCTTTTCTAATACAACTCAGTCACAGCACTCTAAACAGGAAGCATGCAAGCTTGGTGATGGTCAAGGCTATGTATCAGCTGTTATGTTGGTGAATGCCCCTCCCAAATCCAAAGATGGGAGTGGGAAGAGCATAGCAGGGCATGTAGGGCAGGTTGGCAACTTTAGGGTACTAAAAATCGAGGGCACTTCCAGCGAAAGCAAGACCAGGGACATGGACGGGCATCTGGCTGGGCTGGGCTACAAGGTCCGCTCATCGGAACTCTGTCAAGTGGCTGAGAATATGGAGCGTTTAGAGAACGCCATCAACACTGTCAACTCATCCAGGGACATTTCTCAAGTCGTCTCCGACACACTCCTCTACGATCCCTCCAACATAGGTTTAGGTTCTTGGGTCGACACACTTCTCTCCGAGTTGGACCAAACGGTGTCGTTGCCCTACGATCTGTGTTCGGACCTACCTGATTTGCCCACGGATCCGAACCGCCAACTGGGGATGGTAACCACCGTCGAAGAAGACTCGGGGATAAGACTCGTTCACACGCTCATCACGTGTGCGGATTCCGTGCAACGTGGCGACCTCCCGTTCGCTGGCTCCCTCATCGACAGCATGCAGGGCCTTCTGGCTCACGTGAACACCTCCTGCGGCATCGGGAAGGTGGCCGGCTACTTCATAGACGCCTTGCGCCGCCGAATCTCGTCTCCGCAAAACGCCGTGTTCCCAACCTCCCCCTACGAGAACGACGTTCTCTACCACCACTACTACGAGGCCTGCCCCTACCTCAAGTTCGCGCACTTCACCGCGAACCAGGCGATCCTGGAGGCGTTCAACGGCCACGACTGCGTTCACGTCATAGACTTCAACCTGATGCAGGGGCTTCAGTGGCCGGCGCTCATACAAGCGCTAGCGCTTCGCCCGGGAGGTCCGCCGTCGTTGAGGCTGACCGGAGTGGGACCCCCCTCACCAGACGAGCGCGACACGCTGCGCGAGATCGGCGCCCGGCTGGCGGAGCTGGCGCACTCGGTGAACGTGCGGTTCGCGTTCCGCGGCGTGGCTGCGTGGCGTCTGGAGGACGTGAAGCCGTGGATGCTGCAGGTGAGTCCGAAGGAGGCGGTGGCGGTGAACTCGATCATGCAGCTGCACCGGGTGCTTGGCTCGGGAATCGATGCGGTTCTTGGCTGGATCCGAAGTCTAAACCCTAAGATCGTGACGGTTGTGGAGCAGGAAGCGAACCACAACGGGGAAGGGTTTCTGGAGCGATTCACCGAGGCTCTGCACTACTATTCCACCGTCTTTGACTCGCTGGAAGCGTGTTCAGTCGAACCGGACAAGGCTCTCGCGGAGATGTACCTGCAGAGGGAGATTTGCAACTTGGTGTGCTGTGAGGGACCGGCCCGGGTAGAGCGGCACGAGCCCCTGGCGAAGTGGAGGGAGCGGCTCGCTAAAGCCGGGTTCAGACCCTTACATTTGGGCTCCAACGCTTACAAACAAGCCAGCATGTTGTTGACTCTCTTCTCAGCCGAGGGTTACTGCGTCGAAGAGAATCAAGGCTCCTTGACCCTTGGTTGGCATAGCCGGCCCCTCATTGCGGCTTCGGCTTGGCAAGCCGCGCCACTAAGAGAAGGCGAAACGCTGCGTTTCCACCGTTGA 3573 0.5004 MHSFRDKVTQKLSHLFPNSSSPQNYVLWLVYMTDVKGRQWVLLYSTLKHGVSLRTLIRKSAELSCPGLLIVGDMQGAVFGGLLDCPLKPTAKRKYQGTNQTFVFTTVYGQPRLFLPTGLNRYYYMCMSDLLVLGGGGNYALCLEEDLLSGTSGPSETFGNSCLAHSPEFKLKNVEYKSYESSLLCGVLHMLPLFKAKMLLFDVQKKRLSSTSLWMGYTMLQDVFDQPLPPKAEQQQQLPIDEISSPLSARIFELCNAEFFPEALPNSEVTSSSNCCYEENSSYAATNISLTVDVENKLNNNGNTVTTPTSTTTTTTNNNTTNSSNLSIIFDSQEEIDNDISASIDFSLSPSFNAPPFLPVTSQQEQFDFSSVQPQVQLPACSVVEGFSQYTTDSVAPPLMGAPLPSVFEEDCISSVPSYVPLNPSSPCTYLSPGMPPYMTPGPLTTALSTDSSGFFGGNILLGSELQTQELEYQGENGRIYCTDSIQRVFNPPDLQALGTESQQLIPGGGSSATLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETNRTTSSNHEDDDEEEVVVKDEDDMVDSSDIFAHISGVNSFKYNYSIHEELVLAKLKGFSNTTQSQHSKQEACKLGDGQGYVSAVMLVNAPPKSKDGSGKSIAGHVGQVGNFRVLKIEGTSSESKTRDMDGHLAGLGYKVRSSELCQVAENMERLENAINTVNSSRDISQVVSDTLLYDPSNIGLGSWVDTLLSELDQTVSLPYDLCSDLPDLPTDPNRQLGMVTTVEEDSGIRLVHTLITCADSVQRGDLPFAGSLIDSMQGLLAHVNTSCGIGKVAGYFIDALRRRISSPQNAVFPTSPYENDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPSLRLTGVGPPSPDERDTLREIGARLAELAHSVNVRFAFRGVAAWRLEDVKPWMLQVSPKEAVAVNSIMQLHRVLGSGIDAVLGWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSLEACSVEPDKALAEMYLQREICNLVCCEGPARVERHEPLAKWRERLAKAGFRPLHLGSNAYKQASMLLTLFSAEGYCVEENQGSLTLGWHSRPLIAASAWQAAPLREGETLRFHR 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00450 1190 Pfam Transcriptional regulator DELLA protein N terminal 714 783 IPR021914 -
Spst10g00450 1190 Pfam CCT motif 537 579 IPR010402 GO:0005515
Spst10g00450 1190 SMART 109ultra 19 180 IPR006571 -
Spst10g00450 1190 MobiDBLite consensus disorder prediction 572 601 - -
Spst10g00450 1190 MobiDBLite consensus disorder prediction 572 594 - -
Spst10g00450 1190 Pfam GRAS domain family 819 1176 IPR005202 -
Spst10g00450 1190 MobiDBLite consensus disorder prediction 300 321 - -
Spst10g00450 1190 SMART DELLA_2 714 790 - -
Spst10g00450 1190 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 746 1172 IPR005202 -
Spst10g00450 1190 Gene3D - 712 780 IPR038088 -
Spst10g00450 1190 ProSiteProfiles GRAS family profile. 810 1176 IPR005202 -
Spst10g00450 1190 Pfam TLD 42 175 IPR006571 -
Spst10g00450 1190 ProSiteProfiles TLDc domain profile. 2 180 IPR006571 -
Spst10g00450 1190 ProSiteProfiles CCT domain profile. 537 579 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00450 Spst-Chr10 4742279 4755397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00450 707 1176 GRAS Transcription Factor Family AT1G14920 47.582 1.52e-149 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst10g00450 GRAS 2e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00450 K14494 - gmx:100803245 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00450 10 4742279 4755397 Spst10g00450 10 4742279 4755397 ECH