Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00444 ATGGATTCGGATCAGGGCAAACTTTTTATCGGCGGGATATCGTGGGACACCACGGAAGACAAGCTCAAGGAGCATTTTGGCAACTACGGCGACGTTTTGAGTACTTCCGTTATGCGGGAGAAGAACACTGGCAAGCCCAGGGGCTTTGGTTTCGTCGTTTTCGCGGATCCCGCCATTCTGGATAGGGTTCTCGAGGATAAACATGTCATAGATGGCAGAACGGTTGATGCCAAAAAGGCCTTCTCAAGAGAGGATCAACAAATTTCTGTCACCTCGAGAGGTGGAAATTCCAATTCTGGCATGAATTCTGGAAATGGGGGAAACATCAGAACTAAAAAGATATTTGTTGGAGGGCTGCCTGCTACCCTGACTGAAGAAAAATTTCGTCAATACTTTGAGTCTTATGGACATGTAACTGATGTAGTAGTTATGTATGATCAGAATACTGGACGGCCACGAGGATTTGGTTTTATTTCATTTGATACCGAGGAGGCTGTTGATAGGGTTTTGCACAAATCATTTCACGATTTAAATGGTAAACAAGTTGAGGTAAAGCGAGCACTCCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTATGATGGGTGGTGCTGGAGGTGGGGGTGGTGGAATTGGTGGGTATCAAGGGTATGGAGCATCTGGTGGTAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAACCTCAAGGTGCTGCAGGTGGATTCCCTCCTTATGGTTCTTCTGCCTATAGTGCTCCCGGGTATGGGTATGGTCCGGCTAATAATGGTATTGGGTATGGTGCATATGGAAGTTATGGTGGTGCGACCGCTGGGTATGGTGGACCGGCTGGTGCAACATATGGGAATCCTAATGTTCCTAATGCTGCTTATGCTGGTGGTCCACCAGGAGGCCCAAGGAGTTCATGGCCTGCTCAGGCACCTTCTGGTTATGGGTCTATGGGCTATGGGAGCACTGCCCCTTGGGGTGCTCCAAGTGGTGGTGCTGGATCTGGCGGTGGGGGTCCTGGTTCAGCAACTGCAGGTCAGTCCCCTGGTGGGGCTGCTGGATATGGGAACCAAGGTTATGGATATGGTGGGTATGGGGGATACGGTGGAAGTGATAGTTCTTATGGGAATTCAAGTGCATATGGTACTGTTGGTGGTCGAACTGGGAGTGCTCCAAACAATAGTGCTAGTGGTCCTGGTGGGGGTGAACTCACAAGTAGTGGTGGCAGTGGTAGCTATATGGGTGGTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCCGAACAAACTCATGCTTCTGGAAATTATGGAACCCCACAGGGAAATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAATCTCGACAAGCCCAGCAGCAGTAA 1431 0.4941 MDSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPAILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPATLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGGGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQGAAGGFPPYGSSAYSAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGSTAPWGAPSGGAGSGGGGPGSATAGQSPGGAAGYGNQGYGYGGYGGYGGSDSSYGNSSAYGTVGGRTGSAPNNSASGPGGGELTSSGGSGSYMGGGYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00444 476 CDD RRM2_Hrp1p 113 190 - -
Spst10g00444 476 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Spst10g00444 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Spst10g00444 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Spst10g00444 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Spst10g00444 476 Gene3D - 107 231 IPR012677 -
Spst10g00444 476 MobiDBLite consensus disorder prediction 387 418 - -
Spst10g00444 476 MobiDBLite consensus disorder prediction 433 455 - -
Spst10g00444 476 FunFam heterogeneous nuclear ribonucleoprotein 1 107 230 - -
Spst10g00444 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Spst10g00444 476 MobiDBLite consensus disorder prediction 387 476 - -
Spst10g00444 476 Gene3D - 4 88 IPR012677 -
Spst10g00444 476 SMART rrm1_1 7 78 IPR000504 GO:0003723
Spst10g00444 476 SMART rrm1_1 113 185 IPR000504 GO:0003723
Spst10g00444 476 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 476 - -
Spst10g00444 476 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Spst10g00444 476 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Spst10g00444 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Spst10g00444 476 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00444 Spst-Chr10 4688329 4691019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00444 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.378 1.11e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00444 K14411 - gmx:100786882 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00444 10 4688329 4691019 Spst10g00444 10 4688329 4691019 ECH