Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00433 ATGTTAAAAGCAGTGGCATCTGGGCTGTTGATTACCTCTGTCCTCATATGTGTATCTGCAAATGATAATGGATTTCCTAGATGTAACTGCGATGATGAGGCCAGCTTGTGGCCTATTGAAAGCATTCTGGAGTGTCAGAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTCTCCATCCCAATTGAGCTGCTTTATTTTATAAGTTGCTCAAACGTCCCCTTCAAATGGGTCCTGATTCAGTTCATTGCCTTCATTGTACTATGTGGATTGACACATTTGCTCAATGGGTGGACCTATGGCCCTCACACTTTCCAACTTATGGTGGCACTTACTGTCTCTAAAATTCTCACTGCATTGGTGTCGTGTGCCACCGCTATAACCCTCATCACTCTTATTCCTTTGCTTCTCAAGGTGAAGGTCAGAGAGTTCATGCTGAAGAAAAAGACATGGGATCTTGGACGTGAGGTTGATAACATTATGAGACAACAGGAGGCTGCAATGCATGTAAGAATGCTTACTCAGGAGATACGCAAGTCACTCGATAGACATACTATTCTGTATACCACTTTGGTGGAGCTGTCTAAAACACTGAGCTTGCAAAATTGTGCTGTGTGGATGCCTAATGTTGATAAGACCGAGATGAACCTCACTCATGAATTAAATGGGAGGAATTTTAATTTGTCTATACCCATCACTGATCCAGATGTTGTGAGAATTAAGGGAAGCGACGGTGTGAATATACTTAGCTCTGACTCAGCTCTTGCTGTCGGGAGTAGTGGAGCTTCTGGAGAGGCAGGGCCAGTTGCTGCTATCAGAATGCCAATGCTACGTGTCTGTAATTTCAAAGGAGGAACACCTGAGCTAAGACAGACTTGTTATGCAATATTGGTCTTAATTCTTCCAATTGGAGAGCCTCTTCCTATTGGAGAGCCTAGATCCTGGAGTAATCAGGAGCTGGAGATAATTAAGGTGGTAGCTGATCAGGTTGCAGTGGCTCTATCTCATGCTGCAATTCTTGAAGAGTCCCAACTTATGAGAGAGAAGTTGGAGGAGCAAAATCGAGCTTTGCAACACGCAAGAAGGAATGCTATGATGGCAAGCCAGGCGAGAAATGCATTTCAGAAAGTCATGAGTGATGGAATGAGGAGACCAATGCACTCAATTTTGGGATTGCTTTCAATGATACAAGATGATAATTTAAAGAATGAACAGAAACTTATCGTGGATGCAATGCTTAGGACCAGCAATGTCCTATCAAACTTGATAAACGATGCCATGGACAACTCAACTAAGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTACATTCCATGCTGAAGGAATCGGCTTGCCTTTCCAGATGCATGTGTGTTTATAGGGGCTTTGGTTTTATGGTTGAGGTTGAGAAATCTTTGCCTGACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTTTACACATGGTTGGGAACCTTCTAGAACACAACCATGGGGGAGGAATCCTTGTATTTCGGGTTTTTGCGGAAACTGGAAGTCAGGGAAGAAGTGATAAAGGGTGGACAACCTGGAGACCAAGCTCTTCTAGTGGGGATGTAAATATTAGATTTGAGATAGGGATCAACAGTACTGATTCTGAAGTCGGGAGCTCAGTTTCATCAGGATTTGGGGGTAGGAAATTTAACAGTGATAGGGTTGGCGGCAGATTGAGCTTCAATATCTGCAAGAGGGTAGTACAGTTGATGCAGGGGAACATATGGTTAGTGCCTTGTGCTCATGGTTATCCTCAAAGTATGACACTTCTTCTTCGGTTTCAATTACGACCATCCATTACCATAGCCATCTCTGAACCTGGAGAAGGTTCAGAGCGTTCCGATTCGAATTCTATGCTGAAAAGCCTGCAAGTTCTTTTAGTGGACAATGATGATGTAAATAGGGTAGTGACCCAAAAATTGCTTCAGAAACTAGGTTGTGTTGTAACTCCTGTTGCTTCAGGATTTGAATGCCTTACTGTTATTGGACCTGCTGGATCTGCCATTCAAGTCATTCTTTTAGATCTTCACATGCCTGATTTAGATGGCTTTGAAGTTGCCACGAGGATTCGGAAGTTTAGAAGTGGAAATCGGCCAATGATTGTTGCATTGACTTCAAGTGCAGAAGAAGATTTGTGGGACAGATGCATGCAAGTTGGTATTAATGGAGTTATCCGTAAACCAGTTTTGTTGCAAGGAATTGCTAGTGAACTCAGAAGAATCCTGATGCAGGGAAATAATGTTCTCTGA 2298 0.4291 MLKAVASGLLITSVLICVSANDNGFPRCNCDDEASLWPIESILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVSKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVDNIMRQQEAAMHVRMLTQEIRKSLDRHTILYTTLVELSKTLSLQNCAVWMPNVDKTEMNLTHELNGRNFNLSIPITDPDVVRIKGSDGVNILSSDSALAVGSSGASGEAGPVAAIRMPMLRVCNFKGGTPELRQTCYAILVLILPIGEPLPIGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQHARRNAMMASQARNAFQKVMSDGMRRPMHSILGLLSMIQDDNLKNEQKLIVDAMLRTSNVLSNLINDAMDNSTKDDGRFPLEIRSFGLHSMLKESACLSRCMCVYRGFGFMVEVEKSLPDNVMGDERRVFQVILHMVGNLLEHNHGGGILVFRVFAETGSQGRSDKGWTTWRPSSSSGDVNIRFEIGINSTDSEVGSSVSSGFGGRKFNSDRVGGRLSFNICKRVVQLMQGNIWLVPCAHGYPQSMTLLLRFQLRPSITIAISEPGEGSERSDSNSMLKSLQVLLVDNDDVNRVVTQKLLQKLGCVVTPVASGFECLTVIGPAGSAIQVILLDLHMPDLDGFEVATRIRKFRSGNRPMIVALTSSAEEDLWDRCMQVGINGVIRKPVLLQGIASELRRILMQGNNVL 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00433 765 SMART REC_2 639 758 IPR001789 GO:0000160
Spst10g00433 765 Gene3D - 626 763 - -
Spst10g00433 765 CDD HATPase_ETR2_ERS2-EIN4-like 476 608 - -
Spst10g00433 765 CDD HisKA 368 430 IPR003661 GO:0000155|GO:0007165
Spst10g00433 765 CDD REC_ETR-like 639 754 - -
Spst10g00433 765 Gene3D - 160 335 IPR029016 -
Spst10g00433 765 Pfam GAF domain 182 334 IPR003018 GO:0005515
Spst10g00433 765 ProSiteProfiles Response regulatory domain profile. 640 758 IPR001789 GO:0000160
Spst10g00433 765 SUPERFAMILY CheY-like 637 758 IPR011006 -
Spst10g00433 765 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 355 436 IPR036097 GO:0000155|GO:0007165
Spst10g00433 765 SUPERFAMILY GAF domain-like 182 344 - -
Spst10g00433 765 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 439 595 IPR036890 -
Spst10g00433 765 ProSiteProfiles Histidine kinase domain profile. 377 591 IPR005467 -
Spst10g00433 765 SMART HisKA_10 370 435 IPR003661 GO:0000155|GO:0007165
Spst10g00433 765 Pfam Response regulator receiver domain 641 748 IPR001789 GO:0000160
Spst10g00433 765 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 611 IPR003594 -
Spst10g00433 765 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 760 - -
Spst10g00433 765 FunFam Ethylene receptor 4 337 431 - -
Spst10g00433 765 Coils Coil 340 370 - -
Spst10g00433 765 PIRSF Ethylen_sen_hybr_HK 1 765 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Spst10g00433 765 Gene3D - 336 433 - -
Spst10g00433 765 Gene3D - 434 612 IPR036890 -
Spst10g00433 765 Pfam His Kinase A (phospho-acceptor) domain 371 435 IPR003661 GO:0000155|GO:0007165
Spst10g00433 765 SMART gaf_1 182 344 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00433 Spst-Chr10 4571660 4574496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00433 20 758 Miscellaneous Gene Families AT3G04580 56.516 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst10g00433 GAF 7e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00433 K14509 - gmx:100787425 1360.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00433 10 4571660 4574496 Spst10g00433 10 4571660 4574496 ECH
Spst6g00508 6 4643809 4646809 Spst10g00433 10 4571660 4574496 ECH