Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00432 ATGTACAGTGCCAAAGTTGGTGTGGCTGAAATGTTTTACCAGATTGAAGGTTCACCAATATGGCTCCTTCTTCTTCTTCTTTCTATACTTTATACTTACCTTTCTCTCACTCATGACTGGTTCTCTCTAATGATAGTACTGTCACCTATTTTGGTTTTCTTAATTATCTCTCTCCATCTTTTCTCTGTTTCTGCCCTCGTATTTCCTCTCTTTGTGCTTGATTCTGTGAAAGGTTTCGCATCTGTTCCGTCCATGCACCTCACCTCTCATTCCTGTACCCTCTCCGGAGCCTCTCATCCATGGGACCAATCAAACACCATATTAACTCTGGCAAATCCTTGGTGGACAGGCCAGGGGGGGTTATCTGGGGTGGACCCAGGAACCCATTCACCTGGCCTAAGCAAACGTCACGCAGACCTTGCAATCAATGAAACCAGTGGTGGTCATAATAGAGAAGAGGATGAAGACAATAGAGATGAACCGAGAGAGGGTGCAGTTGAGGTTGGAACCCGCAGACCTAGAGGAAGACCTCCTGGATCCAAAAACAAGCCAAAACCACCCATTTTTGTGACAAGGGACAGCCCAAACGCCCTGAGGAGCCATGTGATGGAGATAACTGGAGGAGCTGATGTTGCCGAAAGTGTAGCTCAATTTGCAAGAAGGCGTCAGCGTGGGGTTTGTGTCCTCAGTGGCAGTGGCTCCGTGGCCAATGTTACTCTTAGACAACCTGCTGCTCCTGGAGCTGTGGTGGCACTTCATGGGAGGTTTGAGATTTTGTCCCTCACTGGGACTTTCTTACCTGGTCCTGCTCCTCCAGGATCCACGGGACTCACTGTATATCTAGCTGGAGGACAGGGTCAGATAATAGGAGGGAGTGTGGTTGGCTCTCTAGTTGCAGCAGGACCAGTGATGGTGATTGCTGCAACTTTTGCTAATGCAACATATGAGAGACTTCCACTTGATGAAGATGATGAGGGGCCTAGTTCAGCCGCTGCGGTGCAAGGCGGAGGATCGCCGCCGCCACTTGGAATTGGAAGCAGTGGGGGTGGCCAGTTGCAGGGTGGGATTCCAGATCCATCATCTTTGCCTTTGTATAATCTTCCACCAAATGGAGGAGGGGGGCAAGTGGGGCATGAAGCCCTTGCTTGGGCTCATGGACGGGCACCTTTCTGA 1173 0.5004 MYSAKVGVAEMFYQIEGSPIWLLLLLLSILYTYLSLTHDWFSLMIVLSPILVFLIISLHLFSVSALVFPLFVLDSVKGFASVPSMHLTSHSCTLSGASHPWDQSNTILTLANPWWTGQGGLSGVDPGTHSPGLSKRHADLAINETSGGHNREEDEDNRDEPREGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEITGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQIIGGSVVGSLVAAGPVMVIAATFANATYERLPLDEDDEGPSSAAAVQGGGSPPPLGIGSSGGGQLQGGIPDPSSLPLYNLPPNGGGGQVGHEALAWAHGRAPF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00432 390 SUPERFAMILY AF0104/ALDC/Ptd012-like 196 323 - -
Spst10g00432 390 CDD DUF296 199 310 IPR005175 -
Spst10g00432 390 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 145 385 IPR014476 GO:0003680
Spst10g00432 390 MobiDBLite consensus disorder prediction 142 195 - -
Spst10g00432 390 ProSiteProfiles PPC domain profile profile. 195 332 IPR005175 -
Spst10g00432 390 MobiDBLite consensus disorder prediction 319 378 - -
Spst10g00432 390 Pfam Plants and Prokaryotes Conserved (PCC) domain 199 311 IPR005175 -
Spst10g00432 390 FunFam AT-hook motif nuclear-localized protein 198 325 - -
Spst10g00432 390 Gene3D - 198 325 - -
Spst10g00432 390 MobiDBLite consensus disorder prediction 146 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00432 Spst-Chr10 4557207 4559200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00432 110 390 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.544 6.78e-99 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00432 - - var:108341460 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00432 10 4557207 4559200 Spst10g00432 10 4557207 4559200 ECH