Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00422 ATGGCTGCTGATATGACAGATATTGACAATAGTATCTGTAGTCACTGCCTACTGGCTCTTGTTTTCTGCGACTTCTCAACGAAGGAATTGTATATTATGCAATTTGGACGGGAACTTCCAAATATGAACGCAGCTGGTCAGGGAAGGAGTATCGTATCTGAAAGAACCAATTTGTCTGCATTTTTGTCTGTAACATCTGGTATGGATCTTGCAAGCAGAAGGTACTTGATTTATGCGTCACAACATGAGTCACAATCACAGGCACTTTCTCCAATCACAAGTCCTGATGGTTCATTCTTTCACCCTCATCAGCATTCTTCTAGCACCAGTTTTCCCATCATTGCAATTGCCATAATAGGAATAATGGCCACGGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACCGAATTGATATTCTAAGACGTTTCTCTCCATCTAGAAGGCGTGAAGATCCATCACCAATGTACTCACCAGGCACTGAAGCTCGTGGACTAGATGAGGCAATGATCCGGTTAATCCCAGTGATTCAATACAAGACACAGGGGGATAGAGGCTTTGGAGAATGTGCCGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTCAGGATTATACCAAATTGCAGCCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTTTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCACATTGATCAGCTTCTCACCCAAAGATCTTCTTCCCCTCAGGATCAAACCCCACCAAGGGAAAACCTCATTGGAGGTGATGAAGATTTTGTTGTGATTGAATTGGGCAATAATCATGATAGAAGCCAAAATTTGCAAGAGAGAGGCAATGGTTTGGAATTACCATTACCAGCATGTCTTGTTACTCCTTCTACACCAGGGAAATTGGACGGTGGAGATGTGCAGAAGAAGGCAATGAAACTTCATAAAGTGACAAGCATGGGGGATGAGTGTATTGATATTAGAGCAAAAGATGATCAGTTCTCAGTGCAACCAATTAGGAGGTCTTTCTCCATGGACTCATCAGGGGATAGACACTTCTATTTAGCAGTTCAGGAAGCTCTGAGGCTCCAGAACAGGCAAGTCAATGAAGTCAGCTCCATTGAATGTTGCAGTGGTAGTGGTAGTAATAGAGTCAAGAGGTCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTTTGGACCCCTGA 1275 0.4298 MAADMTDIDNSICSHCLLALVFCDFSTKELYIMQFGRELPNMNAAGQGRSIVSERTNLSAFLSVTSGMDLASRRYLIYASQHESQSQALSPITSPDGSFFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRREDPSPMYSPGTEARGLDEAMIRLIPVIQYKTQGDRGFGECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFHIDQLLTQRSSSPQDQTPPRENLIGGDEDFVVIELGNNHDRSQNLQERGNGLELPLPACLVTPSTPGKLDGGDVQKKAMKLHKVTSMGDECIDIRAKDDQFSVQPIRRSFSMDSSGDRHFYLAVQEALRLQNRQVNEVSSIECCSGSGSNRVKRSFFSFGHGSRSRSSVQPVSLDP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00422 424 ProSiteProfiles Zinc finger RING-type profile. 197 239 IPR001841 -
Spst10g00422 424 SUPERFAMILY RING/U-box 187 245 - -
Spst10g00422 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 244 IPR013083 -
Spst10g00422 424 SMART ring_2 197 238 IPR001841 -
Spst10g00422 424 FunFam E3 ubiquitin-protein ligase ATL6 163 245 - -
Spst10g00422 424 CDD RING-H2_EL5-like 196 239 - -
Spst10g00422 424 Pfam Ring finger domain 196 239 IPR001841 -
Spst10g00422 424 PANTHER RING-H2 FINGER PROTEIN ATL16 100 420 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00422 Spst-Chr10 4448333 4453481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00422 102 424 C3H Transcription Factor Family AT1G04360 53.239 2.65e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00422 - - gmx:100775286 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00422 10 4448333 4453481 Spst10g00422 10 4448333 4453481 ECH