Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00419 ATGGAGGAGCACCAGAGGGGGAAGCAGGGCAAGGAAGAGGTGAGGTACCGTGGCGTGAGGCGGCGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGATCCATCGAAGCAAGGGTCGAGGCTGTGGCTGGGGACATTTGACACTGCTGAAGAAGCTGCTAGAGCTTATGATCGTGCAGCTTTTAACTTGAGGGGTCATCTTGCGATTCTCAATTTTCCTAGTGAGTACTACTCCCAAATAAGGGGTTCACCACCTTATCCACCTCACTTAGCAACACCCTCTTCTTCCTCTTCTCATGCTACTGGAAGCACTTCTTCTTCTTGTGCATTCCAGAGGCCTGTTTTCGAGATTCCTTGTTTGGATGATAAGGTGTTGGAGGATCTTCTTGGTCAGTCAGAGGAGCACAAGAAGAAAAAGAAGGGAGATTGA 429 0.5105 MEEHQRGKQGKEEVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPSEYYSQIRGSPPYPPHLATPSSSSSHATGSTSSSCAFQRPVFEIPCLDDKVLEDLLGQSEEHKKKKKGD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00419 142 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Spst10g00419 142 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Spst10g00419 142 MobiDBLite consensus disorder prediction 81 107 - -
Spst10g00419 142 FunFam Ethylene-responsive transcription factor 2 14 75 - -
Spst10g00419 142 PANTHER DNA-BINDING DOMAIN 7 107 IPR044808 GO:0003700|GO:0009873
Spst10g00419 142 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Spst10g00419 142 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Spst10g00419 142 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Spst10g00419 142 CDD AP2 15 73 IPR001471 GO:0003700|GO:0006355
Spst10g00419 142 MobiDBLite consensus disorder prediction 92 107 - -
Spst10g00419 142 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Spst10g00419 142 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00419 Spst-Chr10 4427295 4427723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00419 13 137 AP2-EREBP Transcription Factor Family AT3G23230 68.000 8.70e-49 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst10g00419 AP2 5.3e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00419 - - gmx:100793703 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00419 10 4427295 4427723 Spst10g00419 10 4427295 4427723 ECH