Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00418 ATGGATTCATCTTCCTTCTTCAACTCACCCTCTTCTGATTTCTCCTCCGAATCGTCCTCTCCGGAGGCCTTCTCCTGGGAAGGCTACCTACCCTTCAACGAGAATGACCCGGAGGAGATGCTTCTCTACGGCATGATCGCCGGCGCCACCACAGCCGAGCGCGCCGCCGACCGGGAGGGCTCCCAGGAGAGTGCAGCGGGGAGGAAGGAGAAGTCGTATCGTGGCGTGCGGCGGCGGCCGTGGGGAAAGTTCGCGGCGGAGATAAGGGACTCCACGCGGCACGGGACGAGGGTGTGGCTTGGGACATTCGACAGCGCGGAAGCCGCCGCTATGGCTTACGACCAAGCCGCGTTTTCCATGCGCGGGTCCGCCGCGATTCTGAATTTCCCCGTTGAGATCGTTAGAGAATCGCTTAGGGAGATGAACCACACATTCGACAGCAAAGAAGAAGGTTGTTCCCCTGTTGTCGCTCTCAAGAGGAAACACTCCTTGAGGAGGAAAATTAGCGTCAAGAAAAACAACAAACAGAGTACCGTAGACAATGCGGTCGTGTTTGAAGACCTTGGTCCTGATTACTTGGAACAGTTGTTGATGTCCTCTGATCATATTCCTTCCTCCTTCTGA 624 0.5609 MDSSSFFNSPSSDFSSESSSPEAFSWEGYLPFNENDPEEMLLYGMIAGATTAERAADREGSQESAAGRKEKSYRGVRRRPWGKFAAEIRDSTRHGTRVWLGTFDSAEAAAMAYDQAAFSMRGSAAILNFPVEIVRESLREMNHTFDSKEEGCSPVVALKRKHSLRRKISVKKNNKQSTVDNAVVFEDLGPDYLEQLLMSSDHIPSSF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00418 207 FunFam Ethylene-responsive transcription factor 2 71 132 - -
Spst10g00418 207 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Spst10g00418 207 SUPERFAMILY DNA-binding domain 72 132 IPR016177 GO:0003677
Spst10g00418 207 MobiDBLite consensus disorder prediction 56 71 - -
Spst10g00418 207 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Spst10g00418 207 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Spst10g00418 207 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Spst10g00418 207 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Spst10g00418 207 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Spst10g00418 207 PANTHER DNA-BINDING DOMAIN 27 198 IPR044808 GO:0003700|GO:0009873
Spst10g00418 207 MobiDBLite consensus disorder prediction 1 23 - -
Spst10g00418 207 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Spst10g00418 207 MobiDBLite consensus disorder prediction 1 30 - -
Spst10g00418 207 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00418 Spst-Chr10 4398794 4399417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00418 30 202 AP2-EREBP Transcription Factor Family AT3G23240 62.637 9.26e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst10g00418 AP2 9.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00418 K14516 - gmx:100790598 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03101 1 39639537 39640154 Spst10g00418 10 4398794 4399417 ECH
Spst7g00625 7 6164807 6165454 Spst10g00418 10 4398794 4399417 ECH
Spst10g00418 10 4398794 4399417 Spst10g00418 10 4398794 4399417 ECH