Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00391 ATGAATTCAGAGAAGCCAGTCAGTCCCGATAATTTAAGTGATGAAAACGATCAAGAAGAAGCACAAGATGACACTGGTGGAACCAAACGCTCTTATGAGTGCACATTCTGCAGAAGAGGCTTTACAAATGCTCAGGCTTTAGGGGGTCATATGAACATCCATAGGAAAGACAGGGCCAAGGCCAAGCAATTCACACTTGACGCTTCACCTTCAATTAACAAATTCAACAGTGATGAATCCATGGTCTTTCCTTTTGTCTCGGAGACTTTAAACCAACCCACAAGGCCTTACTCCATTTTGGAGTCTCAGAAGAACTGTGAAATGCACTTTCATCCACCAGCACCTGCACATGCCTTTTATTATGAGTTTTATGACCAAAGGTCTCGGTCTTTAAATTTGAACCAAGAGCTTCGCGGTGCCAACTTGAGTCTCCAAATTGGTCCAAGTCATCATGTGGATGATAATATTCGTCAAGTCAGGAGAGGAAACAAGAAAGATAGTGAAGTGGACTTGGAGCTCAGACTTGGCCATGATCCATACTGA 543 0.4309 MNSEKPVSPDNLSDENDQEEAQDDTGGTKRSYECTFCRRGFTNAQALGGHMNIHRKDRAKAKQFTLDASPSINKFNSDESMVFPFVSETLNQPTRPYSILESQKNCEMHFHPPAPAHAFYYEFYDQRSRSLNLNQELRGANLSLQIGPSHHVDDNIRQVRRGNKKDSEVDLELRLGHDPY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00391 180 MobiDBLite consensus disorder prediction 1 29 - -
Spst10g00391 180 Gene3D Classic Zinc Finger 13 84 - -
Spst10g00391 180 PANTHER OS07G0101800 PROTEIN 10 178 - -
Spst10g00391 180 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Spst10g00391 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Spst10g00391 180 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00391 Spst-Chr10 4119904 4120446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00391 2 176 C2H2 Transcription Factor Family AT3G09290 33.520 1.98e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g00391 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00391 - - vun:114191365 316.62