Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00387 ATGATAAAGTGTATATGTTCTGGGGAGCAGTTAAAGGCAGATGAATTAGGTTACTCATCAGAGTCCCTAGCAACCAGAGACTATTCAGCAAGTGGTGGCTATTCATCTCGACCTGGTGAAAACGACACGAAGCTTGACAATACCAACATTGAAGAAGCAGAGTCTTCTCTCCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCCTTGCTAGGAAGACTTGAGTATCAAAAAGGCAATGTCGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTACTACTGTCGTTCCCAAGGTGAAAGTTTCTATATCTAGAAGATGTGAACCTAATAGACGCCGTTCGGAAAGTGATGTTCAGCCTCCTATGTCAATGCATGCTGTTAGTTTACTTCTTGAAGCTTTCTTTCTCAAGGCTAAATCGTTGCAGGCTCTTGGAAGATTTCAAGATGCTGCTCACTCATGCAAAACTATTTTAGACACTGTTGAATCAGCTTTACCGGAGGGCTGGCCTGAAAACTTTGTCTCAGACTGTAAACTGCAAGAAACAGTGGCAAATGCTGTAGAACTGCTTCCAGAATTGTGGAAGCTTGCGGGCTCTCCTCAAGATGTAATCTCATCGTTTAGGAGGGCCATGCTTTATCATTGGAATCTTGAAATTGAAGCTACTGCAAGAATACAAAAGGAATTTGCTTTTTTTCTTCTGTATAGTGGTTGTGAAGCTAGCCCTCCTGCTCTCCGATCTCAGTTGGATGGTTCCTTTGTGCCAAGAAATAACATAGAAGAGGCTGTTCTTCTGCTTCTGATTTTGCTGAGAAAATATATTCTTGGATACATTGTATGGGACCCTTCATTGGTTGATCACCTTTCTTTTGCTCTAAGTGTTTCAGGGGAATTCATGACTCTAGCTCAACAGGTTGAGGAATTGCTTCCTGAAAACATGGACAGAAAAGAAAGATACTATACTCTAGCTCTTTGTTACTGTGGAGAAAGTGAACATATGACTGCTTTAGATCTTCTGAGGAACTCTTTGAATCATAGAGAGAACACAGAATGTTTAAAGGAGTTACTTCTAGCTTCAAAAATTTGTGCAGACAACAAGCTTTGCACTGAAGAAGGAATCAAATATTCTGTCAAAGCCATTTCTCAGTTGAATGGAATGTGTGTGCAGATGGTAGCTATTGCAAATTGCTTGCTAGGTGTTCTACTGTCATCAAAATCCAGGTCAGCTGCTTCTGAATCAGAGAAGGTTTTTTTGCAGTCTGAAGCACTCTGTGCTCTAAAAGATGCTGAGATAATGATGAGGGAAAGTGATCCTTACATTGTCCTTCATCTTTGTCTAGAATATGCTGAACAGAGGAAGTTAAGCATTGCTTTTGATCATGCAAAGAAACTGATTATGCTTGAGGCTGGATCTAGCGTTGATGGATATATTCTACTTGCACGGATCTTATCTGCTCAACAAAAGTTTGAAGATGCAGAGTTTGTTATAGATGCTGCTATAGATCAAAGTGGGAAATGGGAACAAGGAGAATTGTTGAGAACTAAGGCTAAACTGCGAATTGCACAGGGAAAATTAAAGAATGCAGTGGATACATATACTTTTCTTCTTGCTGTTCTTCAGGTCCAACATAAAAGTTTAGGCACGGCAAGTAAGACTAAGGGAAACCGTGACAGAAGACTGGAAATGGAAGTATGGCATGATTTAGCCAATGTGTACACGGCCTTATCACAGTGGCAAGATGCTGAAGTTTGTCTAGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAGGGTTTACTTTTTGAAGCCAGAGGTCTTCATCAAGAGGCTCTGAAATCATTTAGGAAAGCATTAGATATTGAGCCCAACCATGTGCCTAGTTTGATATCCACAGCCTGTGTGCTCAGACAACTTGGTGGCCAATCATCTTCAATAGTTAGAAGCCTTCTCACTGATGCATTACGCCTTGACAGAACAAACCCATCGGCTTGGTACAATCTTGGACTGTTCTACAGAGCTGATTTGGGGACATCAGCAATGGAAGCTGTTGAATGTTTTGAAGCAGCAGCTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2130 0.4075 MIKCICSGEQLKADELGYSSESLATRDYSASGGYSSRPGENDTKLDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNVEAALHVFEGIDITTVVPKVKVSISRRCEPNRRRSESDVQPPMSMHAVSLLLEAFFLKAKSLQALGRFQDAAHSCKTILDTVESALPEGWPENFVSDCKLQETVANAVELLPELWKLAGSPQDVISSFRRAMLYHWNLEIEATARIQKEFAFFLLYSGCEASPPALRSQLDGSFVPRNNIEEAVLLLLILLRKYILGYIVWDPSLVDHLSFALSVSGEFMTLAQQVEELLPENMDRKERYYTLALCYCGESEHMTALDLLRNSLNHRENTECLKELLLASKICADNKLCTEEGIKYSVKAISQLNGMCVQMVAIANCLLGVLLSSKSRSAASESEKVFLQSEALCALKDAEIMMRESDPYIVLHLCLEYAEQRKLSIAFDHAKKLIMLEAGSSVDGYILLARILSAQQKFEDAEFVIDAAIDQSGKWEQGELLRTKAKLRIAQGKLKNAVDTYTFLLAVLQVQHKSLGTASKTKGNRDRRLEMEVWHDLANVYTALSQWQDAEVCLAKSEAINPYSASRWHTKGLLFEARGLHQEALKSFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLFYRADLGTSAMEAVECFEAAAFLEESSPIEPFR 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00387 709 PANTHER PROTEIN NPG1 2 709 IPR043376 -
Spst10g00387 709 Gene3D Tetratricopeptide repeat domain 42 562 IPR011990 GO:0005515
Spst10g00387 709 Pfam Tetratricopeptide repeat 599 631 IPR019734 GO:0005515
Spst10g00387 709 SUPERFAMILY TPR-like 512 679 IPR011990 GO:0005515
Spst10g00387 709 MobiDBLite consensus disorder prediction 27 43 - -
Spst10g00387 709 Gene3D Tetratricopeptide repeat domain 563 705 IPR011990 GO:0005515
Spst10g00387 709 MobiDBLite consensus disorder prediction 27 47 - -
Spst10g00387 709 SMART tpr_5 318 351 IPR019734 GO:0005515
Spst10g00387 709 SMART tpr_5 564 597 IPR019734 GO:0005515
Spst10g00387 709 SMART tpr_5 475 508 IPR019734 GO:0005515
Spst10g00387 709 SMART tpr_5 133 166 IPR019734 GO:0005515
Spst10g00387 709 SMART tpr_5 598 631 IPR019734 GO:0005515
Spst10g00387 709 SUPERFAMILY TPR-like 133 531 IPR011990 GO:0005515
Spst10g00387 709 ProSiteProfiles TPR repeat profile. 598 631 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00387 Spst-Chr10 4062496 4066851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00387 2 709 Calmodulin-binding Proteins AT4G28600 53.729 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00387 K21843 - gmx:100789469 1248.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00387 10 4062496 4066851 Spst10g00387 10 4062496 4066851 ECH