Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00371 ATGCACGCTATACCTTTCAAGAGGTACGTCGAGATCGGGAGGATTGCTCTCGTCAACTACGGCAAGGAATATGGCAAGCTCGTCGTCATCGTTGACGTCATTGACCAGAACAGAGCACTTGTCGATGCCCCTGACATGGTCAGATCCCAAGTCAATTTCAAAAGGCTTTCCCTAACCGATATTAAGATTGATATCAAGAGAGTCCCAAAGAAAAAAGATCTTGTTAAAGCCATGGAGGCTGCTGATGTTAAGAACAAGTGGGAGAACAGCTCATGGGGCAGGAAACTCATTGTCAGAAAGAGAAGAGCAGCCCTCAGTGACTTCGATAGGTTCAAGTTAATGTTGGCCAAGATTAAGAGAGCAGCTGTGGTAAGGCAAGAGCTCTCTAAGCTGAAAAAGAGTGCTTAG 408 0.4583 MHAIPFKRYVEIGRIALVNYGKEYGKLVVIVDVIDQNRALVDAPDMVRSQVNFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWENSSWGRKLIVRKRRAALSDFDRFKLMLAKIKRAAVVRQELSKLKKSA 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00371 135 Pfam Ribosomal protein L14 48 120 IPR002784 GO:0003735|GO:0005840|GO:0006412
Spst10g00371 135 SUPERFAMILY Translation proteins SH3-like domain 8 96 IPR008991 -
Spst10g00371 135 Gene3D - 95 130 - -
Spst10g00371 135 PANTHER 60S RIBOSOMAL PROTEIN L14 5 134 IPR039660 GO:0003723|GO:0003735
Spst10g00371 135 FunFam 60S ribosomal protein L14-1 4 87 - -
Spst10g00371 135 CDD KOW_RPL14 10 82 IPR041985 -
Spst10g00371 135 Gene3D - 4 87 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00371 Spst-Chr10 3955546 3958132 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00371 4 134 Cytoplasmic Ribosomal Protein Gene Family AT4G27090 80.916 1.66e-73 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00371 K02875 - gmx:100499889 241.121