Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst10g00352 | ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACACCGAAGGAATCAAAAGTCTTCGAAGAGAAGGTGCACGCCTCGAGTGGAGAGATAAAGATGCAAAGACCCCCTTGATTGTTGCTTGTATGAATCCTCAGCTTTATAACGTTGCGAAAACGTTGATAGAACTTGGAGCCAATGTCAATGCATACCGTCCTGGTCGTCATGGTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCTTTGAAAGTATTATTAAGTTACTTCTTTCGCATGGAGCCAATCCTTTAATATTAAATGATGATTGTCTAACTGCCCTGGAGGTTGCCAGGGTTAAAGGGCACCGCAATGTTGTTCGTACAATTGAGAGTCATCTATGCTTGTTCTCTGGTTGGTTGCGGGAATCTCATGGACCTGGGTTTCTAGATGCAGTGGCTCCTCATTTGTTATCCAAAAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCCCGAAATCTTACCAAACCTTACAAGTTGGAGCTTGCCATATATTCTAATTTGCAGGAAGCACAACCACGTACGGTTATTGCACTATGGAAGGCCAATTTACAAGAACCAAAGCTTCACCAGTCTGATCCATCAGTGACAATTGTTGATCACACTACTAAAACACGCATTAGACTTGGGCCTGCTAGTGACAATGACAAGCAACAACTTGCATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGACAAGTCCAGCATTCTTGCAAAACAAGGCGCCTACAGGTCCACCCACAGCACCACCAGCTGTAGAAGACACAGAGTTGGCTATGGCCATCAGTGCATCACTTCAGTCTGCCATGCAGGAGCGGCCACCCTATCCTGATACACGACCAAACGTCGATGCAAGCTCTTCAAGCAGTGCAGTGAATGCTGGCAATCATGGTTTTCTTGGCACACCAAATTCAAATACAAGTGATAGCGAGTTGGTACAAGAAGCTAACCCTGGTGGCAATAGTCAGCACCTCAAAAGCCATGTGAATGCTAGTGCTTTGGATTTCAATCCATCGGCTCCGCCAATCGTCGGTGATATTCCAACTGATGGCCCCATTCAGTATCCATCAATTGATTTAAGCCCTGTTGATATTGCATCTTCAGATGTTGAGAAGCTTCGTAATGAAGAGGGAAAAACTGCTAGTGGAAATGGCTCATCATGTGTTATATGTTTAGATGCTCCGGCAGAAGGGGCATGCATACCGTGTGGCCATGTTGCAGGATGCATGTCTTGCTTGAACGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTATGTCGAGGTAAGATAGACCAGATCATAAAGCTATATCATGTTTGA | 1374 | 0.4527 | MGQGQSKDELLYQQVSYGNTEGIKSLRREGARLEWRDKDAKTPLIVACMNPQLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFESIIKLLLSHGANPLILNDDCLTALEVARVKGHRNVVRTIESHLCLFSGWLRESHGPGFLDAVAPHLLSKKVWVVVLPVGSRNLTKPYKLELAIYSNLQEAQPRTVIALWKANLQEPKLHQSDPSVTIVDHTTKTRIRLGPASDNDKQQLAWFSNACKGIPQTSPAFLQNKAPTGPPTAPPAVEDTELAMAISASLQSAMQERPPYPDTRPNVDASSSSSAVNAGNHGFLGTPNSNTSDSELVQEANPGGNSQHLKSHVNASALDFNPSAPPIVGDIPTDGPIQYPSIDLSPVDIASSDVEKLRNEEGKTASGNGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRGKIDQIIKLYHV | 457 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst10g00352 | 457 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 382 | 456 | IPR013083 | - | |
Spst10g00352 | 457 | SMART | ring_2 | 406 | 444 | IPR001841 | - | |
Spst10g00352 | 457 | PANTHER | ROLLING PEBBLES, ISOFORM B | 394 | 454 | - | - | |
Spst10g00352 | 457 | ProSiteProfiles | Ankyrin repeat region circular profile. | 75 | 101 | - | - | |
Spst10g00352 | 457 | ProSiteProfiles | Ankyrin repeat profile. | 39 | 72 | IPR002110 | GO:0005515 | |
Spst10g00352 | 457 | CDD | RING-HC_XBAT35-like | 406 | 455 | - | - | |
Spst10g00352 | 457 | MobiDBLite | consensus disorder prediction | 286 | 343 | - | - | |
Spst10g00352 | 457 | Gene3D | - | 3 | 160 | IPR036770 | - | |
Spst10g00352 | 457 | ProSiteProfiles | Ankyrin repeat region circular profile. | 39 | 69 | - | - | |
Spst10g00352 | 457 | Pfam | Ankyrin repeats (3 copies) | 75 | 127 | IPR002110 | GO:0005515 | |
Spst10g00352 | 457 | ProSiteProfiles | Zinc finger RING-type profile. | 406 | 445 | IPR001841 | - | |
Spst10g00352 | 457 | ProSiteProfiles | Ankyrin repeat profile. | 75 | 107 | IPR002110 | GO:0005515 | |
Spst10g00352 | 457 | MobiDBLite | consensus disorder prediction | 299 | 343 | - | - | |
Spst10g00352 | 457 | SUPERFAMILY | RING/U-box | 405 | 451 | - | - | |
Spst10g00352 | 457 | SMART | ANK_2a | 75 | 104 | IPR002110 | GO:0005515 | |
Spst10g00352 | 457 | SMART | ANK_2a | 39 | 69 | IPR002110 | GO:0005515 | |
Spst10g00352 | 457 | SUPERFAMILY | Ankyrin repeat | 9 | 133 | IPR036770 | - | |
Spst10g00352 | 457 | Pfam | Zinc finger, C3HC4 type (RING finger) | 404 | 451 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst10g00352 | 396 | 454 | C3H Transcription Factor Family | AT3G06140 | 33.898 | 1.01e-08 | 55.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst10g00352 | - | - | gmx:100805974 | 801.971 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst10g00352 | 10 | 3534572 | 3540441 | Spst10g00352 | 10 | 3534572 | 3540441 | ECH |