Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00347 ATGGTGAGAGCACCTTGCTGTGAGAAGATGGGATTGAAGAAGGGTCCTTGGACTCCCGAGGAAGATCAACTCCTCACATCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGCCTGTTGAGGTGTGGGAAGAGTTGCAGACTGCGCTGGATTAACTATTTGAAGCCTGATATCAAGAGAGGGAATTTCACATCTCAGGAAGAAGAAACTATCATTGAGCTGCATGAGACCCTGGGGAACAGGTGGTCAGCTATTGCAGCAAAATTACCCGGAAGAACTGATAATGAAATAAAAAATGTTTGGCACACCAATTTGAAGAAGAGGCTGCTGAAAGCAGACCAGTCCAATTCAAATTCCAGAAGGGCCACAAAGCCAAGAATCAAACGTTCTGATTCCAATTCCAGTATCATAACTCAATCAGAACCTGCCAATTTTAGTTTAAGGGAAATGGACTCAACATCAGCATGCACAACTTCTAGTGATTTTTCATCTGTCACAGTTGGTGACAGCAAAACTATCAAGTGTGAAGACATAGAGTCTCTGGAGACAATGCCTGTGATTGACGAGAGCTTTTGGTCAGAACCTGCAATCGATGAAACTCCCTCCATGTCATCACAATCCATGACGATCTCAACTGAGATGCCACTTCAATACCCTTTTACTAACTATGAGGAAACTTTCCAACAGAGTCATGCTTATGATTCAAGCTTTGATGACGGCATGGATTTCTGGTATGACATACTCACCAGGACTGCGGATTCAATAGAATTGCCAGAGTTCTGA 804 0.4391 MVRAPCCEKMGLKKGPWTPEEDQLLTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLKPDIKRGNFTSQEEETIIELHETLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLLKADQSNSNSRRATKPRIKRSDSNSSIITQSEPANFSLREMDSTSACTTSSDFSSVTVGDSKTIKCEDIESLETMPVIDESFWSEPAIDETPSMSSQSMTISTEMPLQYPFTNYEETFQQSHAYDSSFDDGMDFWYDILTRTADSIELPEF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00347 267 CDD SANT 69 112 IPR001005 -
Spst10g00347 267 MobiDBLite consensus disorder prediction 136 156 - -
Spst10g00347 267 SMART sant 13 63 IPR001005 -
Spst10g00347 267 SMART sant 66 114 IPR001005 -
Spst10g00347 267 CDD SANT 16 61 IPR001005 -
Spst10g00347 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Spst10g00347 267 Gene3D - 69 143 - -
Spst10g00347 267 MobiDBLite consensus disorder prediction 119 156 - -
Spst10g00347 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst10g00347 267 Gene3D - 13 66 - -
Spst10g00347 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Spst10g00347 267 FunFam Myb transcription factor 11 67 - -
Spst10g00347 267 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 212 - -
Spst10g00347 267 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst10g00347 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst10g00347 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst10g00347 267 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00347 Spst-Chr10 3470415 3472169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00347 1 267 MYB Transcription Factor Family AT2G31180 46.739 1.88e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst10g00347 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00347 K09422 - gmx:100807569 464.151