Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00342 ATGCGGGCTACATATAAAGACAACAGCGATGTCAGGGAAATCGAAGATCAGCTTTCCTCAGCTCTCAGTAGTCTTCACCTGAAATGTATAGAAAAGAAGTTAATAGATGAGAACTTGAATCACTGTCCGGTGTGCAGTAGTGACTTGGGTTGTTCTCCACTCGAGAAATTAAGGTCAGATACTCGATTCCAAGAATTGAGGGACAAAATTTTCCCAGTTAAAGAACCAAAAGATGAGGCACCTTCAGCCAAATTGAAAGTGAAGGGAAAAAGAAATTTTGTGTCTTCATTAAAACCCAATAGAGAAATAGCCAAAGGTGGTTTTAGAAAATTTCTAATTGCAGAAGAACCACATCTTTCACCTCCCAAACCTGATAAGGTGGAAGATGCTACGGAAGATGAAAACCAGAGTGAGGATGAATTTGAGGAAGAAGATGATACAGTTGGATCTGCAAGAAGAGCGAAAGCTGCGGCAAGAATAAAATTCATTCGCTCTGCACAACCTCCAAGTGGTGACATAATAGGAGAAGAAAAGATAGATGATGACCAGCCTCCAATTGAAACTTCCAGCGGAACACTCAAAATCAGAATTCCGATGAAGAATTCTTCAAAATCAAAGGCTGAGTCAAGGAATGAAAAGACTGACATGTTTGAACCATTAAATAGTCTGGTTGAAGGTGGAAGAAAACGCAAGTCTCGTAGTAAGTCCACCATGCAAGAAAATGGTGCTCCTTCGGTACTCGTGCCCTCTGACGACGATGACCTTCATGTTCATATGGTCCACAAGAAGCGTCGCAGAAGTGCTGGTTATCAAAACGAGTCAACTCCGTCAAACTCAGATTCAGTGAAACATGTTGTGAACACTCAAGAAAAAACACCAAAAATCCCGGAGGATTTGAATTTTCCAGCACAATCTGAGATTGGTTCCGACTCTATTGAAAGCAACAAAGAGTTTGGACCAATCTGGTTCCGGTTGGTTGCTGCAGAAGAGAATAAAGGGAGTGAACAATTGCCACAATTATCTTCCGGCTACTTACGGGTCAAGGATGTCAGTGTAACAGTTTCCTATATTAAAAAGTATCTCGTGAAGAAACTTGGTCTTGCCAGCGAAACTGAGTGA 1119 0.4138 MRATYKDNSDVREIEDQLSSALSSLHLKCIEKKLIDENLNHCPVCSSDLGCSPLEKLRSDTRFQELRDKIFPVKEPKDEAPSAKLKVKGKRNFVSSLKPNREIAKGGFRKFLIAEEPHLSPPKPDKVEDATEDENQSEDEFEEEDDTVGSARRAKAAARIKFIRSAQPPSGDIIGEEKIDDDQPPIETSSGTLKIRIPMKNSSKSKAESRNEKTDMFEPLNSLVEGGRKRKSRSKSTMQENGAPSVLVPSDDDDLHVHMVHKKRRRSAGYQNESTPSNSDSVKHVVNTQEKTPKIPEDLNFPAQSEIGSDSIESNKEFGPIWFRLVAAEENKGSEQLPQLSSGYLRVKDVSVTVSYIKKYLVKKLGLASETE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00342 372 Coils Coil 127 147 - -
Spst10g00342 372 MobiDBLite consensus disorder prediction 115 305 - -
Spst10g00342 372 MobiDBLite consensus disorder prediction 131 145 - -
Spst10g00342 372 MobiDBLite consensus disorder prediction 201 215 - -
Spst10g00342 372 MobiDBLite consensus disorder prediction 270 288 - -
Spst10g00342 372 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 26 372 IPR044807 GO:0004842
Spst10g00342 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 95 IPR013083 -
Spst10g00342 372 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00342 Spst-Chr10 3421023 3425378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00342 18 348 C3H Transcription Factor Family AT2G30580 26.781 9.86e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00342 K16277 - gmx:102669950 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00342 10 3421023 3425378 Spst10g00342 10 3421023 3425378 ECH