Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00340 ATGTTGGGAAAGGAGCATGGTCTAAATCTCAAGGAAACTGAGCTTTGCCTCGGTTTGCCTGGTGGTGGTGGTAGCGGAGGCGGTGGTGGTGGCGGTGGCTCTGAGGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACAGTTGATCTGAAGCTTAATCTTCAGGCCAAGGAAGATCTGAATGAGAATCTGAAGAATGCCTCAAAGGAGAAGACCCTCAAGGATCCTACCAAGCCACCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGACACAGAAGGTTAACACTGAGGAAGGAGCTGAGAAGACAACAAGCAGCACTGCTTCCGGGGCATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGATAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTGGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCAATTGGGCTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 723 0.4882 MLGKEHGLNLKETELCLGLPGGGGSGGGGGGGGSEVETPRATGKRGFSETVDLKLNLQAKEDLNENLKNASKEKTLKDPTKPPAKAQVVGWPPVRSYRKNMMTQKVNTEEGAEKTTSSTASGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMDNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00340 240 Gene3D - 116 234 - -
Spst10g00340 240 FunFam Auxin-responsive protein 117 232 - -
Spst10g00340 240 Coils Coil 50 77 - -
Spst10g00340 240 MobiDBLite consensus disorder prediction 64 88 - -
Spst10g00340 240 ProSiteProfiles PB1 domain profile. 122 222 IPR000270 GO:0005515
Spst10g00340 240 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 227 IPR003311 GO:0005634|GO:0006355
Spst10g00340 240 SUPERFAMILY CAD & PB1 domains 119 221 - -
Spst10g00340 240 Pfam AUX/IAA family 41 231 IPR033389 -
Spst10g00340 240 MobiDBLite consensus disorder prediction 64 80 - -
Spst10g00340 240 MobiDBLite consensus disorder prediction 18 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00340 Spst-Chr10 3403250 3405433 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00340 109 230 B3 DNA Binding Superfamily AT4G23980 33.607 2.28e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Spst10g00340 AUX_IAA 7.1e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00340 K14484 - gmx:100810762 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00340 10 3403250 3405433 Spst10g00340 10 3403250 3405433 ECH