Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00338 ATGTTCCCTTTGCCTTTCCTTAAAGCCAACGCTCCTCATTTATCTCCCAAACGGCATCTTGACCCTCCCAAAAGTCTCTTCCCTTATGGGACACTCACCCTGTCCCACCCTTGTCCTCCTTTTAGTGTTTTGGATTATAGATTGTACTCGGAAGAGATGGAAAGCACTGTGACATATGAGAGTGATCTCAACCTCAGGGCAACTGAGCTTAGATTGGGGCTCCCAGGAACAGAAGAAAGAGAGGAAAAAACACTGCCTGCAGCTGTTAGAATTACCAACAAAAGGCCATTGACTGAAACTTCTGAGGAGAGTGTTTCTAAGGGCCCTAATGCTCAACATGTGGAAACTGAGGCAGCCCCTCCTGCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAACAGCCTTAAGGAGAATGAAGGTGCTGGGATTTATGTGAAAGTGAGCATGGATGGAGCCCCTTACCTTAGGAAGATTGACTTGAAGGTATATGGAGGCTACGCACAACTCCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAAGAAGGTTACAAGGGATCTGACTATGCACCAACATATGAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTGAGAATCATGAAAGGATCAGAGGCCAGGGGTTTGGGTTGTGGTGTATGA 735 0.4612 MFPLPFLKANAPHLSPKRHLDPPKSLFPYGTLTLSHPCPPFSVLDYRLYSEEMESTVTYESDLNLRATELRLGLPGTEEREEKTLPAAVRITNKRPLTETSEESVSKGPNAQHVETEAAPPAKAKIVGWPPIRSYRKNSLKENEGAGIYVKVSMDGAPYLRKIDLKVYGGYAQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00338 244 Gene3D - 141 244 - -
Spst10g00338 244 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 63 238 IPR003311 GO:0005634|GO:0006355
Spst10g00338 244 FunFam Auxin-responsive protein 142 244 - -
Spst10g00338 244 ProSiteProfiles PB1 domain profile. 147 234 IPR000270 GO:0005515
Spst10g00338 244 SUPERFAMILY CAD & PB1 domains 137 233 - -
Spst10g00338 244 MobiDBLite consensus disorder prediction 95 119 - -
Spst10g00338 244 Pfam AUX/IAA family 68 241 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00338 Spst-Chr10 3383822 3385285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00338 141 240 B3 DNA Binding Superfamily AT2G46530 35.000 1.76e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst10g00338 AUX_IAA 2.1e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00338 K14484 - gmx:100527777 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00338 10 3383822 3385285 Spst10g00338 10 3383822 3385285 ECH