Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00334 ATGGTTGGGTTGGAGCTCGTTCCCATAGGTACAATTTTGACAGTGGTAACTAACCAAGTTTTGAAAACAGCTCAGGCAGCATCTGATGTTCTTATTGGTAAAGAAAGTTTCAAGGCCCTTTCAAAACATCTATTTGATATTGAGCCAGTGCTAAAGGAATTGCAGCTTCAAGAATTGAATGACTCTCAAGCCGCAAGGGTTGCTCTTGAGTCTCTTGAAGCAGATGTTAAGAAGGCAAATAATTTGGTGGATAAGTATAAGAACCGTGGCCGTTTTTACTTACTGATTAAGTGTCGATCCATAGTTGAGGAGGTTGAACAAGTCACAAGGGATATTGGCAAGTCTCTGGCTGCACTGTCTATTGCAAATGCTGAAGTCCTATCAAGAATTTCTGATCAGGTCAATAGATTGCAAAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCCCAGTCTCAGATTCAAATTGTTGACAAGTTGAACCAGGCACTTAAAGAACAGAAACTAGATCAGGCTTTTGCAAATGACATGCTAGAAGAGATAGCAAGTGCAGTTGGGGTGCCAGTGGAACCCTCAGAGATAAGCAAAGAGTTGGCCAGCATTAGGAAGGAAAAAAAAGAAGCTTCTGAACGGAAAGAAAGAGCTGAATGTGTTCTGTTGGATCAGATCATTCAGTTACTCTCTCGAGCTGATGCAGCAAGGGATTATCAAGAAGTGGAGAGGCGATACTTTGAAAGGGTTAAGGCGATAGAGAATTCAAGGGAAAAATATATCCCCCCATTCAATCCTTTCCTTTGTTCTATAACTGGAGCTGTTATGGAAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGACATGCTATTGAGGCTTGGTTTTACGATGGCAACAGGAAAGATCCAGAAACTGAACAGGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCTTTAAGACAATCTATTGAAGAGTGGAGAGAACTTAATTATTGTCTGAAAATAAGGTCTATCAGGGAAAATTTATTATCATATTCTGACCTTCAAGAATCCATGACCCAAATGCAGGCTCTCGTAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTGTTATCTCTATCCTTGGGAGCTCTAATGAGGAAGAAGTGAAGATGAAGATTTTGATAACTTTGAAGGATGCTGTAGAGGGGAATACAAGAAACAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATCACATTGTTTCCTGCTTAGGGAGTGACTCTAGCATTTCAAAGGCAGCAATTGATCTGCTATACGAACTGCTTCAAGAACAATCTGGTTGGAATCAATGTCTCTGTAAAAAGCTTTCTGATAATCACACTGCAGTTTGCTCTCTTGTTGCCCTTTTAAAAAATGTTGCCAACCATTCTGCTGAGGTAGCAGAAAAGATTTTAATGAAGCTTTTTGAACTAAACGAGGAAACCATTACTATTGCTGCTAATTTTGGCTGGTATAAACCACTTGTTGATCGCATGATTGAAGGACCGGATTCAAGAATAACATTGGCAAAAACCATAGTTAATTTGGAGTTGAATGATGAAAACTTGAAACTCCTTGGCGAGGAAGGAGTTATACCTCCTTTGCTAGAAATGTTGTCGGGAAGCATTGAATCAAAAGACTTGTCATTGTTCGCCCTGGTTAAATTAGCAGGATCTCATGCTAATAAAGGAATTATTGCTGCATCTGGAGGAGTTCCTCTTATTCTAGATCTAATGTTCTCCCCTCGGACACGGACATTCATTATCATTAAATGCACTGAAATCATTGAGAAGCTTTCTTCAGATGGTGATGGAATTGATTTCTTTGTTGATGGAGATGGGAAACAACTTGAGTTAGATTCCATCATCACCAATGTGCTAGCTTTGCAGCAGAGTTCCAACTTAGGTCCCAACATCCGTAAGCCTGCACTGCGTGCACTTCTTGGCATTTGCAAGTTTGAGACTGGTTTGGTTAAGAAAGCAATTCTTGCAGCTAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATCCCGACTCAGAAATCAGGGAGACTTCCATAATTCTGCTCTTTTTATTCTCTCAACACGAGCCAGAAGGAGTAGTTGAATACCTCTTCAGGCCTAGAAGGCTGGAAGCTTTGATCGGGTTTCTAGAGAATGAGAATGATAATGTACAGATGGCTGCCGCTGGTTTACTTGCTAACCTGCCAAAATCAGAACGAGAACTCACTATGAAATTGATAGAGCTGGGTGGACTTAATGCAATCATAAGCATTTTGAAAACTGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAAATATTGAGTCTCAGCGAGATTTGGTTAAACACGGAATATATCCTTTGCTTGTAGATTTTCTCAACACTGGTTCGGTCACAGCAAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTAACAGTTGTTCCCAAACCAACGGGTTGCTGGCTTTGCAGATCATCACGTGTTCCTTTGTGTCCAGCACACGGGAGTATATGCAGTGTGAACAACACATTTTGTCTTTTGGAAGCTAAGGCCTTACCGGGTTTGATAAAGCTGTTACATGGGGAGGTTCATGCAACTGCTTGTGAAGCAATACAGACACTTTCCACATTGGTTTTGGAAGACTTTCCTCAAGGGGGAGCTCTTGTCTTGCATGACAATAATGCAATAAGATCCATATTGGACATTTTGAACTGGGGAACTGATTCTCTCAAGGCAGAAGCTCTAGGACTGTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAATACTACGGAACAACAGCTAGATCACGTCTAATTGGTTTGACTGGCATGAATATATACGGAGATGGTCACCTCAGGAGAAAGGCTGCTAAGGTACTATCATTGCTTGAACGCTATTCAAAGTCATCATCATCTGCAATCTCAGGAGTTCTGGAGGGAAATTAG 3039 0.411 MVGLELVPIGTILTVVTNQVLKTAQAASDVLIGKESFKALSKHLFDIEPVLKELQLQELNDSQAARVALESLEADVKKANNLVDKYKNRGRFYLLIKCRSIVEEVEQVTRDIGKSLAALSIANAEVLSRISDQVNRLQNEMQRVEFEASQSQIQIVDKLNQALKEQKLDQAFANDMLEEIASAVGVPVEPSEISKELASIRKEKKEASERKERAECVLLDQIIQLLSRADAARDYQEVERRYFERVKAIENSREKYIPPFNPFLCSITGAVMEDPVSLCTGTTCERHAIEAWFYDGNRKDPETEQVLEDTTLRSNIPLRQSIEEWRELNYCLKIRSIRENLLSYSDLQESMTQMQALVRENSINKDWISIGELTDIVISILGSSNEEEVKMKILITLKDAVEGNTRNKEKVAESQGWDHIVSCLGSDSSISKAAIDLLYELLQEQSGWNQCLCKKLSDNHTAVCSLVALLKNVANHSAEVAEKILMKLFELNEETITIAANFGWYKPLVDRMIEGPDSRITLAKTIVNLELNDENLKLLGEEGVIPPLLEMLSGSIESKDLSLFALVKLAGSHANKGIIAASGGVPLILDLMFSPRTRTFIIIKCTEIIEKLSSDGDGIDFFVDGDGKQLELDSIITNVLALQQSSNLGPNIRKPALRALLGICKFETGLVKKAILAANGVSLILPLLDDPDSEIRETSIILLFLFSQHEPEGVVEYLFRPRRLEALIGFLENENDNVQMAAAGLLANLPKSERELTMKLIELGGLNAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKHGIYPLLVDFLNTGSVTAKARAAAFIGDLSMSTPKLTVVPKPTGCWLCRSSRVPLCPAHGSICSVNNTFCLLEAKALPGLIKLLHGEVHATACEAIQTLSTLVLEDFPQGGALVLHDNNAIRSILDILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLIGLTGMNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLEGN 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00334 1012 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Spst10g00334 1012 SUPERFAMILY RING/U-box 249 328 - -
Spst10g00334 1012 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1002 - -
Spst10g00334 1012 CDD RING-Ubox_PUB 263 312 IPR045210 -
Spst10g00334 1012 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Spst10g00334 1012 Gene3D - 339 501 IPR011989 -
Spst10g00334 1012 Pfam U-box domain 263 327 IPR003613 GO:0004842|GO:0016567
Spst10g00334 1012 SMART arm_5 572 614 IPR000225 GO:0005515
Spst10g00334 1012 SMART arm_5 753 793 IPR000225 GO:0005515
Spst10g00334 1012 SMART arm_5 796 836 IPR000225 GO:0005515
Spst10g00334 1012 SMART arm_5 404 443 IPR000225 GO:0005515
Spst10g00334 1012 SMART arm_5 869 909 IPR000225 GO:0005515
Spst10g00334 1012 SMART arm_5 710 751 IPR000225 GO:0005515
Spst10g00334 1012 SMART arm_5 532 571 IPR000225 GO:0005515
Spst10g00334 1012 SMART arm_5 668 708 IPR000225 GO:0005515
Spst10g00334 1012 Coils Coil 127 154 - -
Spst10g00334 1012 Gene3D - 6 124 IPR036537 GO:0007166
Spst10g00334 1012 CDD MLKL_NTD 10 145 - -
Spst10g00334 1012 Coils Coil 62 89 - -
Spst10g00334 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 335 IPR013083 -
Spst10g00334 1012 SUPERFAMILY ARM repeat 869 1002 IPR016024 -
Spst10g00334 1012 Gene3D - 512 843 IPR011989 -
Spst10g00334 1012 Gene3D - 850 1006 IPR011989 -
Spst10g00334 1012 SUPERFAMILY ARM repeat 361 832 IPR016024 -
Spst10g00334 1012 Coils Coil 197 217 - -
Spst10g00334 1012 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 722 749 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00334 Spst-Chr10 3310249 3314244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00334 260 965 U-box Gene Family AT1G20780 28.836 1.30e-48 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00334 - - gmx:100783638 1717.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00334 10 3310249 3314244 Spst10g00334 10 3310249 3314244 ECH