Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00318 ATGGAGGGGAGAGAGAGTTTTGGTGTTGTGGTGGGTGATGAAGCTCCAGAGAGCTTCCATGTGGCTCCTAGAATAATTGAGAACAATTTGGATTTTTCAAGAGCCGCCATGCCGGTGCCGTCGCCGGTGACGGAGGGTAAAAAGAAGAGAGGGAGGCCGAGGAAGTATGGGCCGGACGGGAAGGTGGCGTTGGGGGCGGTTACGGCTTTATCGCCGATGCCTATTTCATCGTCGATTCCGTTGACCGGCGAGTTTTCCGCTTGGAAGCGAGGTAGAGGAAGGCCTGTTGAATCTATTAAAAAGTCATCGTTCAAGTTTGAGGTTGAAAGCCCTGGACCAGGTGATGGAATAGCATACTCAGTTGGTGCCAATTTCACACCACATGTGCTCACAGTAAATGCTGGCGAGGATGTCACAATGAAAATTATGTCCTTCTCACAACAAGGATCACGCGCTATATGCATTCTCTCTGCAACTGGGACAATTTCAAATGTTACACTTCGTCAACCATCTTCTTGTGGGGGTACTTTAACATATGAGGGACGGTTTGAAATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGACAATGGAGTTACTAGAAGCAGATCTGGTGGAATGAGTGTCTCTTTGGCCGGTCCAGATGGTAGAGTAATGGGGGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGCCCTGTTCAGGTTGTGGTGGGCAGTTTTCTTCCTGGTCACCAGTTGGAGCAAAAAAATAAGAAGCAAAGGGCGGAGCAGATATCAACTATTACCACTTCACCTGTTACTCTCATCTCTAGTGAGGAACTAAAAGTCAGTTTTGGTGGAGTAAAGCCTATTATGACACCTGCAGCTTTTCAAGAAGAGAATATTGTTTCTTTTAACAATGGTCAAGACTCTAGGAACTCATCTCCTGATGACAAAGATCCTATACCTGAAAAGGAGTCTAATTTAAGCCAATCAAACGCTGAGGCTGCATGCTAA 996 0.4669 MEGRESFGVVVGDEAPESFHVAPRIIENNLDFSRAAMPVPSPVTEGKKKRGRPRKYGPDGKVALGAVTALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVESPGPGDGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTDNGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFLPGHQLEQKNKKQRAEQISTITTSPVTLISSEELKVSFGGVKPIMTPAAFQEENIVSFNNGQDSRNSSPDDKDPIPEKESNLSQSNAEAAC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00318 331 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Spst10g00318 331 SMART AT_hook_2 47 59 IPR017956 GO:0003677
Spst10g00318 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 35 309 IPR039605 GO:0003680
Spst10g00318 331 MobiDBLite consensus disorder prediction 36 58 - -
Spst10g00318 331 Gene3D - 127 262 - -
Spst10g00318 331 FunFam AT-hook motif nuclear-localized protein 1-like 127 258 - -
Spst10g00318 331 ProSiteProfiles PPC domain profile profile. 122 261 IPR005175 -
Spst10g00318 331 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 240 IPR005175 -
Spst10g00318 331 SUPERFAMILY AF0104/ALDC/Ptd012-like 124 244 - -
Spst10g00318 331 MobiDBLite consensus disorder prediction 295 331 - -
Spst10g00318 331 CDD DUF296 126 240 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00318 Spst-Chr10 3170002 3175688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00318 47 315 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 59.140 3.27e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00318 - - gmx:100776862 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01675 4 56473730 56477349 Spst10g00318 10 3170002 3175688 ECH
Spst10g00318 10 3170002 3175688 Spst10g00318 10 3170002 3175688 ECH
Spst4g01675 4 56473730 56477349 Spst10g00318 10 3170002 3175688 PCT