Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00308 ATGTCAAACTTAAATTTAATGTTTATTTTGTTAGCAGTTCTTCTTCTTTTTCTGAAAAATCTCAGTAGAGTACATTGCCATACCAAGGGAATTAGACCAACACTTTCTGCGGGTAAAGGGTTATCGATCAACATAACTAGAGTGCAGTATTCTGAAGAGGAATTCATGAAATGGGTGAACTTTGTTGGTTCCCTCAAACACTCAGTTTTTAAGGCAGCTAGGACTAAGCCGGTGGCTTCTTACACTTTGCACGTTGATAAGGATCCTAGTGCTGGAGATTTTACCTCCATTCAAGAAGCCATTGATTCCCTTCCATTCGTCAATCTTGTGAGAGTGATCATAAAAGTCCATGCAGGAGTCTATACGGAAAAAGTCAACATTCCTGCCTTCAAATCCTACATAACAATAGAGGGAGCTGGTGCAGATGAAACCATTGTTAAATGGGGTGACACTGCTCAAACCCCTGGCTCGAATGGGAGGCTTCTAGGAACCTATGGTTCAGCAACTTTTGCAGTGAATTCACCTTATTTCGTTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGCAATTGGAAAGCAAGCGGTGGCATTCAGGATTTCAGCAGACACAGCAGCATTCGTAGGCTGCAAATTCTTAGGAGCACAAGACACACTTTATGATCATGTGGGCAGACATTACTATAAGGATTGTTACATAGAAGGCTCTGTTGATTTCATATTTGGCAACTCCCTCTCTCTATTTGAGGGATGTCACGTGCATGCGATAGCACAGAATACAGGGGCGGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACAGGGTTCTCATTTGTGAACTGTAAGGTCACAGGGTCAGGGGCACTATACCTTGGAAGGGCATGGGGACCCTTTTCTCGCGTGATCTTTGCTTACACGTATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTTTTCTATGGGCAGTACAAGTGCACAGGACCTGGAGCAAGCTTTGCAGGGAGAGTGTCATGGTCAAGAGAACTCACTGATGAAGAAGCTATACCTTTTCTTTCACTTTCCTTTATTGATGGGACCGAATGGGTCAAATTATAG 1146 0.4363 MSNLNLMFILLAVLLLFLKNLSRVHCHTKGIRPTLSAGKGLSINITRVQYSEEEFMKWVNFVGSLKHSVFKAARTKPVASYTLHVDKDPSAGDFTSIQEAIDSLPFVNLVRVIIKVHAGVYTEKVNIPAFKSYITIEGAGADETIVKWGDTAQTPGSNGRLLGTYGSATFAVNSPYFVAKNITFQNTTPVPAPGAIGKQAVAFRISADTAAFVGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQNTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVIFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAIPFLSLSFIDGTEWVKL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00308 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 75 380 - -
Spst10g00308 381 Pfam Pectinesterase 90 375 IPR000070 GO:0030599|GO:0042545
Spst10g00308 381 SUPERFAMILY Pectin lyase-like 78 380 IPR011050 -
Spst10g00308 381 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Spst10g00308 381 Gene3D - 78 381 IPR012334 -
Spst10g00308 381 FunFam Pectinesterase 79 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00308 Spst-Chr10 3088172 3092366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00308 5 379 Carbohydrate Esterase AT5G47500 44.415 6.12e-105 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00308 K01051 - gmx:100793314 699.508