Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00307 ATGGGGAGAACCACTAGGTGGGTGAAGAGTTTGTTTGGTATTAAAAGAGAGAAAGAGAAGAAACAAAACTCAAAGAGTGGAAAGGCCAACAACATGGAATTGGGTTGTTCTGAGAGTACTAGTAATTCAAAAGTTTTGTGTCACAATCCAGGGACCATACCTCCCAACATTTCTCAAGCTGAGGCTGCTTGGTTACAGTCCTTCTACACAGGGAAGGACCAAAACAATCACGCCATAGCAGTTGCTGCCGCCACGGCAGCAGCAGCCGATGCTGCTGTGGCTGCAGCACACGCTGCGGTGGCAGTTGTAAGACTCACCAGCCAAGGAAGGGGTGGCACCATGTTTGGTGTTGGACCTGAGATATGGGCTGCTGTCAAGATTCAAGCAGTGTTTAGAGGATACTTGGCAAGAAAGGCACTCAGGGCATTAAAAGGATTGGTGAAGTTGCAGGCACTTGTCAGAGGGTATTTAGTGAGGAAGCAAGCAACAGCAACACTGCGTAGTATGCAGGCTCTTGTTAGAGCTCAAGCTACAATACGGTCCCACCAATCTCGCAGGCTCATGAGCACGAAGAATGAAGCATTTAGATCTCAAAATAGAGCAAGAAGATCAATGGAGAGGTTTAATGATACTAGGAGTGAGCATAAAGTTCCAATCCACAGAAGAAGAGTATCATCTTCTTTTGATGCTACAATTAACATCCGCAACAGTGTTGACGGGAGCCCCAAAATAGTGGAAGTGGACACTTTCAGGCCTAAGTCAAGGTCAAGAAGGACAATATCAGATTTTGGTGATGAACCATCACTTCAGGCACTTTCCTCTCCCTTCCCAATTCCATATAGAGGTACCCCTACACGTTTGTCCATACCAGACCAAAGGAATTTTCAGGACTCTGAATGGGGGTTGACAGGGGAAGAATGTAGGTTCTCTACAGCACAAAGCACTCCACGCTTCACAAATCCTTGTAGTTGTGGCCCAGGTGCACCTATGACACCCCAAAGTGTGTGTACTGATAACTTGTTCCTAGGGCAATATGAAAATTTTCCAAACTACATGGCTAGTACTCAGTCATTTAAGGCCAAGTTGAGGTCTCATAGTGCTCCAAAGCAACGACCAGAACCAGGTCCAAGGAAAAGACTCTCCCTCAATGAAATGATGGAGTTTAGAAGTAGCTTGAGTGGGGTTAGAATGCAGAGGTCTTGTTCACAAGCTCAAGAAGTCATTAATTTCAAGAATGCTGTGATGGGAAAGCTTCAGAAATCTACAGAATCTGTTAGGGAGACAGACAGAAACTATTTCCACCAGAGAAGGTGGTGA 1317 0.4556 MGRTTRWVKSLFGIKREKEKKQNSKSGKANNMELGCSESTSNSKVLCHNPGTIPPNISQAEAAWLQSFYTGKDQNNHAIAVAAATAAAADAAVAAAHAAVAVVRLTSQGRGGTMFGVGPEIWAAVKIQAVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLRSMQALVRAQATIRSHQSRRLMSTKNEAFRSQNRARRSMERFNDTRSEHKVPIHRRRVSSSFDATINIRNSVDGSPKIVEVDTFRPKSRSRRTISDFGDEPSLQALSSPFPIPYRGTPTRLSIPDQRNFQDSEWGLTGEECRFSTAQSTPRFTNPCSCGPGAPMTPQSVCTDNLFLGQYENFPNYMASTQSFKAKLRSHSAPKQRPEPGPRKRLSLNEMMEFRSSLSGVRMQRSCSQAQEVINFKNAVMGKLQKSTESVRETDRNYFHQRRW 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00307 438 Gene3D - 120 171 - -
Spst10g00307 438 MobiDBLite consensus disorder prediction 15 35 - -
Spst10g00307 438 PANTHER IQ-DOMAIN 5-RELATED 1 383 - -
Spst10g00307 438 SMART iq_5 142 163 IPR000048 GO:0005515
Spst10g00307 438 SMART iq_5 119 141 IPR000048 GO:0005515
Spst10g00307 438 MobiDBLite consensus disorder prediction 359 378 - -
Spst10g00307 438 ProSiteProfiles IQ motif profile. 123 148 IPR000048 GO:0005515
Spst10g00307 438 MobiDBLite consensus disorder prediction 256 279 - -
Spst10g00307 438 Pfam Protein of unknown function (DUF4005) 315 400 IPR025064 -
Spst10g00307 438 Pfam IQ calmodulin-binding motif 122 141 IPR000048 GO:0005515
Spst10g00307 438 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515
Spst10g00307 438 MobiDBLite consensus disorder prediction 193 215 - -
Spst10g00307 438 MobiDBLite consensus disorder prediction 196 215 - -
Spst10g00307 438 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Spst10g00307 438 ProSiteProfiles IQ motif profile. 168 197 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00307 Spst-Chr10 3083819 3085402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00307 1 397 IQD Protein Family AT3G16490 50.365 7.39e-92 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00307 - - gmx:100788710 655.981