Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00296 ATGGTTGTGAGCGGAGGGAAGGGCCTCAAGCGCGCCGCAAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTCACGTTCCCCACGTCGTCCCTCGCCGACGCGGAGAACTTCGCCGGCGGGCCCTTCCGCTCCAACGTCCGCTCCTTCCTAACCAAGCACGCGCTGCTTCCGCCGCCGTCTGCGTTGTTCCCGCACCTGCTGACGTGGCAGATACTCTTCCGCGTTGGCGAGCTCACCGAAGGCCTTGACTCGCCGGTGGTGTGCCTCGACGTCGTGGAGGAAGACGTCGCCAGATCTAGATCCGTGTACTGTGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGAAAACGTTACCATTTTATAATCAAAGCCGATGGAAGCTCCATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAATGCAAGTCTTGCAACCACGTGACTACCAGTGATGATGTCGAAGACTGGGTGTACCACCAATTAGAGAACACTACTCATCTTTTACATGGCGTTGTCCATGCCAATGGATATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTTGTCATATAATGGATTTCTGGGATCGCCTATGCAAGACTCTTGGAGTCAGAAAAGTTAGTGTCATGGATGTTTCAAAGAAATATGGGCTAGAGTACCGCTTGCTGCATGCCATTGTGAAGGGACACCCATGGTATGGTGACTGGGGTTATAGATTTGGCTCGGGTAGCTATTGTCTCACGCATGAAGCATACAAGTCTGCTGTTGAAAACCTATCGAATCTACCCTTGTCCACCTTTTCTCAGGGACAGATGCCAATGCCTCATTCTCGTGTGCAGGACATGATCAAATATTTCCAGTCTTTGTCAGAGCATGAGCTTGTAAATATAAGAGATCTCTTTTGTTTCATAATGGGTTTGATTGGTGATGCTCGCAAGACTGTATCAAATATAGATGACACAACCTGTAGAAAGCGTCGTTTTAATGCTTGTGGATTGTCAATTTCTTGGGAGAAGGCAGACATTGAACGTGTGGAGCAGGCTATGATTAGAGTGCTTCGTGCGGTGTCTGAGTCTAAGTGGGTGAACTGGCGGGCTCTCAGGGGTGCGGCCTGCAAGGTGGGCTCTCCAGAGCTGCTTGATTATTGCCTGGGAGAACTGGGAGGAAAAATGGTTTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTACGAATTCAGACTCGAGGCTGCTACTGGTGCTTGTTATGGAACTTTAGCGAACAATAATTCCTCAGGCTCGAAGTATCCATCTGAAGAAAACCTGCTACAATGCTTGAGATATTTATACGACTCCTTGCTTCATCCTCAGATGATGATAAACTACGTTGAAGCAGGGACAAGGACTCTTGCCATGAGCTCAGCTCAAAAGCTTTTCGACTGCAAGCAATTTGTAAAAGATTATGGTCCTGAGTTGTTGCAATTGTCAGATTTGCACAAGTTACGAATATCATGCCAGGTTGAACTAGTAGATGAATCTGAAGATTCAGAAGCTGTAGCTCCACCAGAATTAATTGTCCTGCCCATGAACGCCACTGTGGCCGAGCTTAAAAATCAAGCAGCGAATGCTTTTCAAGATGTATATCTAATGTTCAGAAGATTTCAAGTTGATGAGCTAGTAGGCTATAGCGGTGTTGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGACGTAGTTTCTGTCCGAGGAAGATGCATTGGGAAGAATGGGCTGAGCAAGTTCCGAATGGAACGGGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGGGCTAAGGATGACGATGGGGAGAGAATGCTGGCGTGCGATATATGTGGTGTGTGGCGGCACACTAGGTGTTCTGACATCCATGATATTGATCCTGTTCCTGCACGTTTTGTTTGCCTGAAATGTCAAAACTCTGAATCCAAACTCAAATCTGGTGGGCACTGCAAAGATGAGACTGTGACTAACGTTAGTACTAGTAGTAATTGTTTCGGAAAAAGCTTCCCAGTGCCATCTGATATAGGGCTTAGCGATAGGTTCAGCGACAGGGCATGTCTTGTTCATATTTCAGCTGCTCCACCGTAG 2193 0.4806 MVVSGGKGLKRAAKKRVTADFYDFLTFPTSSLADAENFAGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQILFRVGELTEGLDSPVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTSDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIVKGHPWYGDWGYRFGSGSYCLTHEAYKSAVENLSNLPLSTFSQGQMPMPHSRVQDMIKYFQSLSEHELVNIRDLFCFIMGLIGDARKTVSNIDDTTCRKRRFNACGLSISWEKADIERVEQAMIRVLRAVSESKWVNWRALRGAACKVGSPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRLEAATGACYGTLANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMINYVEAGTRTLAMSSAQKLFDCKQFVKDYGPELLQLSDLHKLRISCQVELVDESEDSEAVAPPELIVLPMNATVAELKNQAANAFQDVYLMFRRFQVDELVGYSGVDDSTQVKLLLGSKDVVSVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDIDPVPARFVCLKCQNSESKLKSGGHCKDETVTNVSTSSNCFGKSFPVPSDIGLSDRFSDRACLVHISAAPP 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00296 730 ProSitePatterns Uncharacterized protein family UPF0054 signature. 183 193 IPR020549 -
Spst10g00296 730 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 687 - -
Spst10g00296 730 CDD PHD_MMD1_like 627 672 - -
Spst10g00296 730 SMART PHD_3 627 673 IPR001965 -
Spst10g00296 730 Pfam PHD-finger 628 674 IPR019787 -
Spst10g00296 730 SUPERFAMILY FYVE/PHD zinc finger 617 675 IPR011011 -
Spst10g00296 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 679 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00296 Spst-Chr10 2962562 2967287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00296 78 672 PHD Transcription Factor Family AT5G22260 30.866 5.08e-87 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst10g00296 PHD 1.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00296 K26271 - gmx:100818189 1340.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00296 10 2962562 2967287 Spst10g00296 10 2962562 2967287 ECH