Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00294 ATGGAGTCAAGCAATTTACATGCTGACAAAAGGGCGGATAAAAAGATAGTAAGATACAAGGAATGTCTGAAGAACCATGCAGCTGCAATTGGAGGCAATGCAACTGATGGGTGTGGAGAGTTCATTGCTGATGGAGAAGAAGGCACCCTTGAGGCTCTCAAGTGTTCAGCTTGCAATTGCCACAGAAACTTCCACAGACAAGAGATAGAGCCTTCTGATTATTCCACTCCTTTGATGATTATTCCTGACACTACTCAGATAAGGCCCATGTTGGCTTATCTATCTCCCAACAAAAGTGGTTCAATTAGTCCTTCTGATGTGTCTGATGAGAAGGACTGTGAAGATGGGGTGATTAAGGAGGTGGAAAATCCAACTGAAAAGGTGAAGAAGAGGTTTAGAACCAAGTTCACACAAGAACAAAAGGAGAAGATGTTTCTTTTTGCAGAAAGGGCAGGGTGGAGGATACAGAAGTTAGATGAATCTGTGGTGCAGAAGTTTTGCCAAGAGATTGGAATCAAAAGAAGAGTCCTCAAAGTGTGGATGCACAATAACAAGAATACTTTTGTCAAGAGTAATTATCCTTCCACTAGCTAG 594 0.4192 MESSNLHADKRADKKIVRYKECLKNHAAAIGGNATDGCGEFIADGEEGTLEALKCSACNCHRNFHRQEIEPSDYSTPLMIIPDTTQIRPMLAYLSPNKSGSISPSDVSDEKDCEDGVIKEVENPTEKVKKRFRTKFTQEQKEKMFLFAERAGWRIQKLDESVVQKFCQEIGIKRRVLKVWMHNNKNTFVKSNYPSTS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00294 197 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 69 IPR006456 -
Spst10g00294 197 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 68 IPR006456 -
Spst10g00294 197 Pfam ZF-HD protein dimerisation region 17 69 IPR006456 -
Spst10g00294 197 Gene3D - 118 191 - -
Spst10g00294 197 SUPERFAMILY Homeodomain-like 126 189 IPR009057 -
Spst10g00294 197 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 187 - -
Spst10g00294 197 NCBIfam homeobox domain, ZF-HD class 129 186 IPR006455 -
Spst10g00294 197 FunFam Zinc-finger homeodomain protein 2 117 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00294 Spst-Chr10 2949118 2949711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00294 14 192 ZF-HD Transcription Factor Family AT1G14440 51.269 3.01e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst10g00294 ZF-HD_dimer 6.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00294 - - gmx:100793926 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00294 10 2949118 2949711 Spst10g00294 10 2949118 2949711 ECH