Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00293 ATGGCTTCCAGGCGTTTGAGGACATTAAAGCGGTGGATGAAGTCCAAGGGATTCCAGTGGAGCGATGCACTGGAGTTTGTGGACACCCCAGAAGAGGGAATAGCGGTGAGAGCTTTGTGCGAGTTGAAGGAAGGTGATGTTGTGGCCAAAATGCCAAAAGAAGCTTGCCTCACCACCAAGACTAGTGGGGCACGTGAGATCATTGAAGAGGCTGGTTTGGATGGTCATTTGGGGCTAGCATTTGCCATCATGTATGAGAGAAGCTTGGGTGGGGACTCCCCTTGGAATGGATACCTTCAACTCTTGCCTTACCAAGAGAGCGTGCCAATTGTCTGGACCCTCAATGAAGTAAACGAGCTTTTGTGTGGTACTGAGCTTCACCAGACAGTGCAAGAAGACAAGGCTCTGATTTATGAGGACTGGAAAGAGAATATTCTTCCCCTATTGGATTTAGCACCCTTAAAACTAAACCCGAAATTCTTTGCCATAGAACAATACTTTGCAGCAAAAAGTCTTATATCTTCACGATCTTTTGAGATTGATGACTACCATGGTTCTGGCATGGTTCCCTTGGCAGATCTATTTAATCATAAAACAGGTGCAGAGGATGTGCATTTCACCGCCATGTCCTCTAATGATGATTCAGACAGTGATGATGATGATAGTACTAATGATGGGGCTCTTAATGAAGAAGTAGCTTTCACCCAAAGTTCCTCTGTGGATATGACTGCGTCCAATATTGCTAATGCTGGAAACTGCACTGCTAGCGATTTAGAGAGTTCTTCAGATAGTGAGGGTGATACTTCTATGTTGGAAATGATTATGATAAAAGATGTCAGCAGTGGAACTGAGGTATTTAATACTTATGGGCTGTTGGGTAATGCTGCTTTGCTTCATAGATATGGATTTACCGAGCAAGATAATTCCTATGATATTGTAAACATAGATATGGAGCTGGTACTTCAATGGTGTTCTTCAACGTTTTCTGACCGCCACAGTAGAGCAAGAGTTGCCCTTTGGAGAAGGTTAGGCTATTCTGCATGTGGCAACCAAAACTCTGAATATTTTGAGATCTCATTTGATGGAGAACCACAAATTGAACTCCTGATTTTATTACACATCATGTTATTGCCAGATAATGCTTACCAGAAGCTAGACCTATCGGTATCAGTTACTGGGAATTCTCATGAATCAAATGTTGGAACCACCCTTCTGAATGGTTATATCTTTCCTAACAAAGCATCTAATATGAGCAAGAAATCCTTGCTGCCTAAAAATACTTGTGATGCCCTGATGTCACTTGCTGACATGAGGGAGAGTCTCTATGGTTTGAATTCAATTGAAGATGACATGGAAGCATTGGAAAGGTGTAGTTTAGTCAGAGAGAGAAAGGTGTTCCACTCTTTGATGCTGCGCATCAATGAAAGGAAGATTCTTGAAAAGCTCAGAAAGTATGCTTCACCGGCAGTTGAAATGAATAAGCATAGTTCTCCAAGGAAGAAATTGAAAAGGACAACAAAGAAAACGAGTTGA 1533 0.4214 MASRRLRTLKRWMKSKGFQWSDALEFVDTPEEGIAVRALCELKEGDVVAKMPKEACLTTKTSGAREIIEEAGLDGHLGLAFAIMYERSLGGDSPWNGYLQLLPYQESVPIVWTLNEVNELLCGTELHQTVQEDKALIYEDWKENILPLLDLAPLKLNPKFFAIEQYFAAKSLISSRSFEIDDYHGSGMVPLADLFNHKTGAEDVHFTAMSSNDDSDSDDDDSTNDGALNEEVAFTQSSSVDMTASNIANAGNCTASDLESSSDSEGDTSMLEMIMIKDVSSGTEVFNTYGLLGNAALLHRYGFTEQDNSYDIVNIDMELVLQWCSSTFSDRHSRARVALWRRLGYSACGNQNSEYFEISFDGEPQIELLILLHIMLLPDNAYQKLDLSVSVTGNSHESNVGTTLLNGYIFPNKASNMSKKSLLPKNTCDALMSLADMRESLYGLNSIEDDMEALERCSLVRERKVFHSLMLRINERKILEKLRKYASPAVEMNKHSSPRKKLKRTTKKTS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00293 510 PIRSF RMS1_SET 1 490 IPR011383 GO:0016279|GO:0018026
Spst10g00293 510 CDD SET_LSMT 23 304 - -
Spst10g00293 510 Gene3D - 306 486 IPR036464 -
Spst10g00293 510 MobiDBLite consensus disorder prediction 490 510 - -
Spst10g00293 510 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 467 - -
Spst10g00293 510 SUPERFAMILY SET domain 267 309 IPR046341 -
Spst10g00293 510 Gene3D set domain protein methyltransferase, domain 1 2 303 - -
Spst10g00293 510 ProSiteProfiles SET domain profile. 22 290 IPR001214 GO:0005515
Spst10g00293 510 Pfam SET domain 33 290 IPR001214 GO:0005515
Spst10g00293 510 SUPERFAMILY SET domain 3 205 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00293 Spst-Chr10 2943592 2946872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00293 3 507 NAC Transcription Factor Family AT3G56570 52.886 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst10g00293 SET 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00293 - K05302 vra:106769924 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00293 10 2943592 2946872 Spst10g00293 10 2943592 2946872 ECH