Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00289 ATGAAGCTTGATGATACTAAGCTGGTTATTTGGGTCAAATCTGCATTTTATAAGGAATCTGGACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCCGAAAACTTCTACAGTGCATTTGAGAGTGAGTTAGCAGATGTTATCCCTGTGGTCAAGACCTCCATTGGTGGCACCCGTATTGTTGGTCGGCTTTGCGTTGGAAACAAGAATGGCCTTCTCTTGCCTCATACCACAACAGACCAAGAGCTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGTATAGAAGAAAGATTATCCGCACTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACCCATACTGATCTTGACAAGGAAACTGAGGAGATGATTGCTGATGTTCTTGGAGTAGAAGTTTTCAGGCAAACTATTGCTGGTAATATTCTTGTTGGCAGTTTCTGTGCATTCTCCAACAGGGGCGGTTTGGTCCACCCTCATACTTCCATCGAAGACTTGGATGAACTTTCTACTCTTCTTCAGGTTCCTTTGGTTGCTGGGACTGTCAATCGTGGTAGTGAAGTTATAGCTGCCGGCATGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTTTCTGTGATCGAGAGTGTTTTCAAGCTGAGAGAAGCCCAACCCAGTGCCATTGTCGATGAGATGAGGAAATCACTCGTGGATACTTACGTCTAA 789 0.4347 MKLDDTKLVIWVKSAFYKESGLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPVVKTSIGGTRIVGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADVLGVEVFRQTIAGNILVGSFCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLVDTYV 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00289 262 CDD IF6 22 240 IPR002769 GO:0042256|GO:0043022
Spst10g00289 262 FunFam Eukaryotic translation initiation factor 6 19 242 - -
Spst10g00289 262 Gene3D - 20 242 - -
Spst10g00289 262 SUPERFAMILY Pentein 22 241 - -
Spst10g00289 262 Pfam eIF-6 family 22 220 IPR002769 GO:0042256|GO:0043022
Spst10g00289 262 SMART eIF6neu2 20 221 IPR002769 GO:0042256|GO:0043022
Spst10g00289 262 Hamap Translation initiation factor 6 [eif6]. 7 262 IPR002769 GO:0042256|GO:0043022
Spst10g00289 262 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 22 261 IPR002769 GO:0042256|GO:0043022
Spst10g00289 262 PIRSF Transl_init_IF-6 19 243 IPR002769 GO:0042256|GO:0043022
Spst10g00289 262 NCBIfam translation initiation factor IF-6 23 241 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00289 Spst-Chr10 2887893 2891635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00289 22 262 Eukaryotic Initiation Factors Gene Family AT3G55620 92.116 1.73e-171 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00289 K03264 - gmx:100777602 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03002 4 69489560 69491952 Spst10g00289 10 2887893 2891635 PCT