Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00278 ATGGCGACATCAAGAAACTATGAGTTTGGAAGGATGAGTGAGGCTAGTCACCCAGACTCTATCAGAGCCGCCATGGCTGAACTCGTCTCCACTTGCCTCTTTGTCTTTGTTGGAGAAGGCTCAGTCCTTGCTTTGAACCAAATTTACAAGGAACCAGGATCATCAGCTAGTGAGTTAGTGGTGATTGCAGTGGCTCATGCCTTTGCTCTATTTGCTGCTATTGCTGCCAGCGCACATGTGTCTGGTGGACATGTGAACCCTGCTGTCACTTTTGGTGCTCTTCTTGGTGGAAGGATCTCTGTCCTTAAAGCCCTTTACTACTGGGTTGCTCAAATCCTTGGTTCTGTTGTTGCTGCTCTCTTGTTGAGGCTTGTCACTAACAACATGAGACCAGAAGGATTCAGTGTATCACCAGGGGTTGGAGCATTTCACAGTCTTTTACTTGAAATTGCGCTTACATTTGGTCTGATGTACACTGTCTATGCCACTGCTATTGATCCTAAGAGGGGTGCCATTGGCACAGTTGCATCCTTAGCCATTGGACTCGTTGTAGGGGCAAACATCCTTGCTGGTGGGCCCTTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCGTTGGTGGGCTGGAGGTGGAACTACCACTGGATCTTCTGGGTGGGCCCATTAATTGGGGCAGCCCTAGCAGCAGTCCTGTATGAATATATTATGGTCCCAATTGATCCTCCTCCTCACCAACCTTTGCCTGCTGAAGATTACTAG 768 0.4909 MATSRNYEFGRMSEASHPDSIRAAMAELVSTCLFVFVGEGSVLALNQIYKEPGSSASELVVIAVAHAFALFAAIAASAHVSGGHVNPAVTFGALLGGRISVLKALYYWVAQILGSVVAALLLRLVTNNMRPEGFSVSPGVGAFHSLLLEIALTFGLMYTVYATAIDPKRGAIGTVASLAIGLVVGANILAGGPFDGACMNPARAFGPALVGWRWNYHWIFWVGPLIGAALAAVLYEYIMVPIDPPPHQPLPAEDY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00278 255 CDD MIP 22 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst10g00278 255 FunFam Probable aquaporin TIP1-1 5 254 - -
Spst10g00278 255 Pfam Major intrinsic protein 15 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst10g00278 255 NCBIfam MIP family channel protein 26 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst10g00278 255 PANTHER AQUAPORIN-8 8 241 IPR034294 -
Spst10g00278 255 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Spst10g00278 255 SUPERFAMILY Aquaporin-like 13 247 IPR023271 -
Spst10g00278 255 Gene3D Glycerol uptake facilitator protein. 5 243 IPR023271 -
Spst10g00278 255 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst10g00278 255 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst10g00278 255 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst10g00278 255 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst10g00278 255 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst10g00278 255 PRINTS Major intrinsic protein family signature 22 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00278 Spst-Chr10 2714749 2715947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00278 1 255 Major Intrinsic Protein MIP AT1G73190 62.687 4.45e-112 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00278 K09873 - gmx:100814469 420.239