Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00272 ATGATCTTGAAGGAGATGGTGGTGAAACCAATAGAAGATATAGTAGTGACAAATACATGTCCAAAGGTTGCAGGTGCTGTGGAAAGGAAGCCAAGGCCACAGAAAGAACAAGCTCTCAACTGTCCGAGGTGCCATTCAATTAACACCAAGTTCTGCTACTACAACAACTATAGCCTCACACAGCCTCGCTATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGTTCCAGGAAGAACAAGAGATCTTCTGCTTTTGGTTCCACTCCTAACAGCAATTCACCCGTCAAGAAGCTTCCTGATCAGGTCATCACACCTCCATCTTTGTCACACTCCCAAAACCCTAAGAATAATAATATTCATCAAGGCCAAGATCTCAATCTGGCTTTCCCCGCCACCACCCCAGATTTCAGAAACATCTCTGAATTTGTTCGAGAAAACAACAACAATAGTGGCAACAGCATGTCTGCTTCGGCCTCTTCTTCTTCAACTACTACTACCACCACACCCACAACTTCTCACCTTTCTGCATTGGAGCTTCTTACTGGGATCACATCAACTTCCACTGGCTTGAATTCTTTCATGCCTGTGCCAGTTCCAGCTGATCCAAATTCTGTCTATACTTGTGGTTTTCCTCTGCAGGATTTCAAGCCTAGCTTGAATTTCTCTTTAGACGGAATTGGACACGGGTACGCGAGCCTGCATAATGTTCAAAGTGGGAGGCTCTTGTTTCCATTTGAGGACTTAAAACAGGTTTCCACCACCACCACAATGGATCAGAAGCAACAAGGAGATTCAACTGGGTATTGGACTGGAATGTTAGGCGGAGGATCATGGTAA 873 0.4513 MILKEMVVKPIEDIVVTNTCPKVAGAVERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSAFGSTPNSNSPVKKLPDQVITPPSLSHSQNPKNNNIHQGQDLNLAFPATTPDFRNISEFVRENNNNSGNSMSASASSSSTTTTTTPTTSHLSALELLTGITSTSTGLNSFMPVPVPADPNSVYTCGFPLQDFKPSLNFSLDGIGHGYASLHNVQSGRLLFPFEDLKQVSTTTTMDQKQQGDSTGYWTGMLGGGSW 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00272 290 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Spst10g00272 290 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Spst10g00272 290 MobiDBLite consensus disorder prediction 80 134 - -
Spst10g00272 290 MobiDBLite consensus disorder prediction 156 183 - -
Spst10g00272 290 MobiDBLite consensus disorder prediction 92 134 - -
Spst10g00272 290 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Spst10g00272 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 173 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00272 Spst-Chr10 2666683 2667555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00272 29 290 C2C2-Dof Transcription Factor Family AT3G61850 46.713 3.58e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst10g00272 zf-Dof 3.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00272 - - pvu:PHAVU_001G080800g 483.796