Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00270 ATGACAATGCCTCTTACTCTAAGAAATAAGCTCAAGACTCTTTGTTCTTCTGCTCTTGGCTGGTCTTATGCTGTTTTCTGGCGCTTTCATCCACGCAATTCCTTGTTGTTGACTGTGGAAGAAGCATACTATGAAGAGCATCTGGGAGAAGAGATTGCCAACATGCATCCTCAGGTCCACTTGCTGGGTGAAGGAATTGTTGGTGAAGCTGCTTTCACGGGCAAGCACAGTTGGGTACACTCAGATGGTCAAACTCATGATTGGAATCTGACTGGGCAAAGTATTTGTGAGGATAATTCTGAATTGCATCAACAGTTTTCCTCTGGAATAAAGACTATTGTGGTCATACCTGTCAAAGCATTGGGAGTGATACAGTTTGGATCCAGAAATAAGATTTTGGAGAGAGTGGAATTTTTGGAGCAAACGCGAAGCATGCTCACAGAAATAGATGCTGATATGGGTATGTTTGACATGTCAGAAAATCCAGTTCAACCACTGGAAAGTGAAAATAACTATTTAAATGGGATGTTGGCTTCCATTTCTTCTGCAAGTCCCAACGATCCCTTCCCTTCCAAATACAAGACTTATGAAGAAGCAGCAGCTTCATATCAAGGAGATTCTTCGTATCTTGGTGACCAATCGAAAGGTACCATGGAAGCTCAAGTTGTATTATCAGATAGGAATAGTAATGACGTGCTTTTGAAGCCTAACTCTTCTACGGTCAACTTAATTGCCAAAACCCCCCATCTTGGTTTATGTGATAATGAATTATCTCCTTTTGATTTGTTGGAGCAACAATTGATTTCCAGTGCTAGGGGACAAGATGTTGCAGATGTATGTTTTATGAATGAAAATGCATTTGCTACTAGCAAACTTCCAGTTCAGGATGCGGGGTTGGCCCCATTGTGCAGTATGGACAGAGGGTCATTTCAAGGAAAATTACAAAATTCACTGGATAACCAATATTCAGCTCAGTCTAGTGTTGTGACAGATGTTGATTTTTCCTCCAGTTCATATGCATTGCATGGACACTCTGAGAACATAGAGCCAGTTGATATGTCAGAAGAAATTTTGAAGTTCAGCTCCATGGATGATCTTTGCCACTTGTTTGGTCCTTCTTCAGAGGATAGCATCTGCAAAACAGTAATTGCATTGGATAACACCTTTTCTGAATCAACAGAATTTAATCCCACTATCTTTGATCTGGTTGGAAGTGGTTCTTTACATGATGCTTTAGCGACAGGCCTAGCTGGGTTTAATTCCAACTCAGATGGGAAAGAAAAATCTCTGGTTATGCATAACACTGGAAAAGGTCTCTTGGATGTCATGGAAATAGATTTTAGCTATGATCAAGCCGATGGATGGTGGGGGAATACGCTTACACCAGTGGTGAGTGGTGTTACTGACACTGGCTTTTCTGAATGCATATCAGAGTTGAATACTGGTACACTACCTGGCACCCGGAAGAGATTGTTCTCAGAGTTAGATATTGAAGAGCTTTTGAGGGGTGGAGCAAATTACAATCTTTTTAATAGTTCGGAATTTGAGTGGGGGTTATCACCCAATAAGAGGCAGACAGTAGAATCTTCATCTATGAATAGCAATACAATACATTTCACCAACCTTCATAGGCCTGCGACTAGAGCAGACTTGATGCAGCCTCTTGGTGACTTGGACAGCACAAACAATCTCCCAAGCAAGAAAGATACATTTTCAAAATTACAAGCAGCCATGTGGCTTGATGATAGCCATAGCATTAATATTGGAAAGGCTGCTCCACAACACCCTCAAAAGCCAGAGGAACCCGCAAAGCCCACCAAGAAGAGAGCTAGGCCAGGGGAGAGTACTCGACCACGGCCAAAAGATCGTCAGCAAATCCAAGACTGTATTAAAGAATTGAGAGGAATCATCCCCCATGGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCGCACCATCAGATACATGCTTTTCTTACAAAGTGTCCTCAAGTACTCAGACAAGCTACAAGAACCGGATGAACCCAAGCTTGTTCAGCAGGAAAATGAAGTGGTTCTAAAAGACCGTGGTGTGGCGGATAGCAAAAGCTGTGGCATTACATGGGCATATGAAGTGGCACACCAAACAATGCTATGCCCCATTATAGTTGAGGACATGAGTCCACCAGGCCAAATGCTTATAGAGATGCTTTATGAGGAGCAGGGTATATTCCTCGAGATAATTGACATAATTCGGGGTTTTGGACTGAATATCTTGAAAGCCAAGATGGAAAGAAAGAAGAACAAGCTATGGGCACGTTTTATTGTTGAGGCAAGCAGACACGTGACAAGGATAGATGTGTTTTGGTCTCTTATCCATCTTCTACAACAAACAAACACCTCCGGCATTGATTCTTCTAAGCATTGCGATGCTCTTGATGCCAATAGCCTCAGGTCCTAG 2439 0.4223 MTMPLTLRNKLKTLCSSALGWSYAVFWRFHPRNSLLLTVEEAYYEEHLGEEIANMHPQVHLLGEGIVGEAAFTGKHSWVHSDGQTHDWNLTGQSICEDNSELHQQFSSGIKTIVVIPVKALGVIQFGSRNKILERVEFLEQTRSMLTEIDADMGMFDMSENPVQPLESENNYLNGMLASISSASPNDPFPSKYKTYEEAAASYQGDSSYLGDQSKGTMEAQVVLSDRNSNDVLLKPNSSTVNLIAKTPHLGLCDNELSPFDLLEQQLISSARGQDVADVCFMNENAFATSKLPVQDAGLAPLCSMDRGSFQGKLQNSLDNQYSAQSSVVTDVDFSSSSYALHGHSENIEPVDMSEEILKFSSMDDLCHLFGPSSEDSICKTVIALDNTFSESTEFNPTIFDLVGSGSLHDALATGLAGFNSNSDGKEKSLVMHNTGKGLLDVMEIDFSYDQADGWWGNTLTPVVSGVTDTGFSECISELNTGTLPGTRKRLFSELDIEELLRGGANYNLFNSSEFEWGLSPNKRQTVESSSMNSNTIHFTNLHRPATRADLMQPLGDLDSTNNLPSKKDTFSKLQAAMWLDDSHSINIGKAAPQHPQKPEEPAKPTKKRARPGESTRPRPKDRQQIQDCIKELRGIIPHGGKCSIDSLLDRTIRYMLFLQSVLKYSDKLQEPDEPKLVQQENEVVLKDRGVADSKSCGITWAYEVAHQTMLCPIIVEDMSPPGQMLIEMLYEEQGIFLEIIDIIRGFGLNILKAKMERKKNKLWARFIVEASRHVTRIDVFWSLIHLLQQTNTSGIDSSKHCDALDANSLRS 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00270 812 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 610 659 IPR011598 GO:0046983
Spst10g00270 812 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 3 800 IPR043561 GO:0003700|GO:0006355
Spst10g00270 812 MobiDBLite consensus disorder prediction 588 625 - -
Spst10g00270 812 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 46 IPR025610 -
Spst10g00270 812 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 145 IPR025610 -
Spst10g00270 812 MobiDBLite consensus disorder prediction 600 625 - -
Spst10g00270 812 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 623 665 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00270 Spst-Chr10 2652939 2657339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00270 575 807 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 48.511 1.74e-63 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00270 - - vun:114190585 1294.26