Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00254 ATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGACAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCTCTGAAAAGGGTAGAAAACAATGAAAAACAAGATGATAAAAACATGACCAGTTGTTCAACCTCTACAAGTGTTTCTGAATCACCATCAACTCAGGTGGAAAATGATGTTCAAGTTCATGAAACTGCAAAGGTTCCTAGATCCCTAAGACGAAGACCATGGATTAATTATGGGCAATATGAGAACCATTCAGATGAAGACTCTGACTGCGAGCGGCTTGATCAAAATTTCTCCTCAAGAACTTATCTTCCTCGTGGAGTCATCCGGGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCAGAAGAAGCTCGGAGGCCAAATATTGAGGATGCTCCTGTTTTCTACCCTACTGAAGAGGAGTTTCAAGATACTTTAAAATATATATCAAGCATTCGCTCCAGGGCCGAGCCATATGGAATTTGCCGCATTGTTCCACCGTCTTCTTGGAAGCCCCCTTGTCCTCTCAAAGAAAAAAGTACATGGGAGGGTTCTAAATTTTCTACACGTGTACAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAGATGTCAAGAGTCCAAAGTAATATGAAGAGAAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGGCACTAGAAGAGGACCTAATGCAGGATTCTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGAGGATTTTCAGCTCAAATACTTCAGAAGAAATGAGAACTTTTCACATTTGGGTGCTAATACAGCAATTTTAAATGGTACCTCCGAGCTTTCTGTGGAGAACATCGAAGGCGAATATTGGCGGATGGTTGAGACTCCTACTGAAGAAATTGAGGTACTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTCCCTAGCAAATCTAGTCAAGTAGGTTCTGCCTCACAAGAAAAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCTAGGCTTCCTGGATCTCTGCTCTCTTATGAAAGCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTACATCGGAATGTGCTTTTCCTCTTTTTGTTGGCATGTGGAAGACCACCATTTATACTCATTGAATTACATGCATTGGGGAGCTCCAAAAATGTGGTATGGAGTCCCTGGAAAAGATGCCTGCAAATTGGAAGAGGCCATGAGAGAGCATTTACCTGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTTAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGTTGTACCAGGAGCAGGGGCGCAAGACTTCTATATCACATGATAAGCTGTTGCTGGGGGCTGCAAGGGAAGCAGTACGAGCCCAATGGGAGCTTCATTTGCTGAAGAAGAATACTTTGGATAATCTACGATGGAAGGATGTCTGTGGAAGGGATGGCCTTTTGGCAAAAGCACTTAAGATGCGTGTTGAGATGGAGCGAGCAAGAAGGGAATTTCTCTGCAGTTCTTCACAGGCGTTAAAAATGGAGAGTACTTTTGATGCTACTAATGAAAGGGAATGCAACGTATGCTTTTTTGATTTACACCTATCTGCAGCTGGCTGTCGCTGTGCCCCGGATTTATATGCTTGCTTAGATCATGCAAAGCAACTTTGTTCATGCTCTTGGGATTCCAGATTTTTCCTCTTTCGGTATGATGTTAATGAACTAAATATTCTAGTGGAGGCATTGGAAGGAAAATTAAGCGCAATATACAGATGGGCAAAATCGGATCTTGGGCTGGCGCTATCATCTTATGACTCAGCAGACAAGGAAACAATACTTAAAGAATTGAAATCACATTCATCCACTTTGTCTCATTCTTCCAGGGCCATTGTGCATAAAGAGGTGGTTCTGCATCCACCAGATAAATATATTGATGATTCTCAATTGATTGATGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGAAAATCAGCCGAAGCTAATTCTTCTTTGAGTTCAATGAAGGAATTGCTAACATTTAAAAGCTCAAAACCTACATCTGAGATGGCTAACCATAAGATCTGTGTTAAAGAAGAATCTGTTATTTGCAGATCAAAGATGAAAACGCCTGGTTGTCAACTATCTCAAGAGGATACATCGAATGCTTTATCTACTCCAGCTCAACAAGGAGGTGAGAAAAGTTCACTTTACAGACATAATACCAATATTATACTTCTTAGTGACGATGAAGATGATGAAAAGATGTCTGATTCAAATAGAAGGAAGGAACTTTCTTCTATGCTTGTAGGTCCTAGAGATAAGGCAAGCCCATGTAACAATATAGAAAATACAAACCTGACCATTTCTGTGACAGAGACTGCTGTGATGGGTGAAAAGGGTGCTATTACATTACCCTGTGAAAATATGAGTTCTGATTCAACTCAGCTTTTGCATGTGAAACAAGAATGTCATGAACACACAGGATTAGTTCTAGCCTCTACCCCACTAGATCTTTCTTGTCATATAGGTCTTACAAGTACGGAGTCTACGAAAAATATTCCATCTCCTTCAAAAGTAGAGGCCAGTGATCATTGTTTGGAAATTTTGGAGATTTCTCCTCTGAACCCACAACTTTCTAGCACTAAGGTTAAGACAGAAGATAATCACGAAAAGTTGGGAGGATGTGCCTCTTCTAATGTAGCAGACAATACAAGAGCTGTTAATGGGAACTTTTCTTGTGGTCCAAACAATTTCCGTCAGAAAGGTCCTCGAATAGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGAGTTGTGATTTCTGGAAAGTCTTGGTGTAGTAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACATAAATGTCTTAAATCCATCCAGTATGTGTTACTATATTTCAGAAATACTTGATGCTGGACGTGGTTGGCCTTTATTTATGGTTTCCTTGGAAAATTGTCCAAGTGAGGTCTTCATTCATATGTCAGCTGCAAGATGCTGGGAGCTGGTCAGAGAGAAAGTCAATCAAGAAATTGCAAAGCAACATAAGTTGGGAAGAAAGGGCCTTCCTCCTTTACAGCCTCCTGGTAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCTCTGGATCGAAGTCGAGTGTGTAATGAATATTGGGACTCACGGCCCTACTCCCGTCCTCTAGGACAGTTTTCACAATCATGCCAAAGCAATGTGAGTGGTGGAAATGGTCAAGGAGTTCTCTTGAATAAGCACATTCCCGTTGAAGTTGTTGCAGTACTAAGGAGCCTATGTAAAAAGGCTAATGCAGAAGAATTGAAGTCGTTGTACAGCATTCTTAGTGACAATAGGCCAGAGGCTGACAGGAACCAAATTGCGCAACTTCTCAAAGAAGAGATTCACAAATCACAACCGCCCTAG 3768 0.4137 MGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMTSCSTSTSVSESPSTQVENDVQVHETAKVPRSLRRRPWINYGQYENHSDEDSDCERLDQNFSSRTYLPRGVIRGCPDCSNCQKVVARWRPEEARRPNIEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSTWEGSKFSTRVQRIDKLQNRDSMRKMSRVQSNMKRKRRRCTRMGVDNGTRRGPNAGFCEVERFGFEPGPEFTLETFQRYAEDFQLKYFRRNENFSHLGANTAILNGTSELSVENIEGEYWRMVETPTEEIEVLYGADLETGIFGSGFPSKSSQVGSASQEKYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMREHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELHLLKKNTLDNLRWKDVCGRDGLLAKALKMRVEMERARREFLCSSSQALKMESTFDATNERECNVCFFDLHLSAAGCRCAPDLYACLDHAKQLCSCSWDSRFFLFRYDVNELNILVEALEGKLSAIYRWAKSDLGLALSSYDSADKETILKELKSHSSTLSHSSRAIVHKEVVLHPPDKYIDDSQLIDVPIENQANSKDQSYFQQRKSAEANSSLSSMKELLTFKSSKPTSEMANHKICVKEESVICRSKMKTPGCQLSQEDTSNALSTPAQQGGEKSSLYRHNTNIILLSDDEDDEKMSDSNRRKELSSMLVGPRDKASPCNNIENTNLTISVTETAVMGEKGAITLPCENMSSDSTQLLHVKQECHEHTGLVLASTPLDLSCHIGLTSTESTKNIPSPSKVEASDHCLEILEISPLNPQLSSTKVKTEDNHEKLGGCASSNVADNTRAVNGNFSCGPNNFRQKGPRIAKVVRRINCNVEPLEFGVVISGKSWCSSQAIFPKGFRSRVRYINVLNPSSMCYYISEILDAGRGWPLFMVSLENCPSEVFIHMSAARCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPLGQFSQSCQSNVSGGNGQGVLLNKHIPVEVVAVLRSLCKKANAEELKSLYSILSDNRPEADRNQIAQLLKEEIHKSQPP 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00254 1255 Pfam F/Y rich C-terminus 1084 1167 IPR003889 GO:0005634
Spst10g00254 1255 Gene3D - 1028 1165 - -
Spst10g00254 1255 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Spst10g00254 1255 Pfam jmjN domain 148 181 IPR003349 -
Spst10g00254 1255 SMART fyrc_3 1085 1179 IPR003889 GO:0005634
Spst10g00254 1255 Pfam JmjC domain, hydroxylase 389 505 IPR003347 -
Spst10g00254 1255 SMART cupin_9 359 522 IPR003347 -
Spst10g00254 1255 MobiDBLite consensus disorder prediction 842 869 - -
Spst10g00254 1255 MobiDBLite consensus disorder prediction 35 74 - -
Spst10g00254 1255 Pfam C5HC2 zinc finger 612 662 IPR004198 -
Spst10g00254 1255 PANTHER LYSINE-SPECIFIC DEMETHYLASE 140 1159 - -
Spst10g00254 1255 Gene3D Cupin 132 506 - -
Spst10g00254 1255 Coils Coil 569 589 - -
Spst10g00254 1255 ProSiteProfiles JmjC domain profile. 359 522 IPR003347 -
Spst10g00254 1255 FunFam Putative lysine-specific demethylase JMJ16 1027 1165 - -
Spst10g00254 1255 Pfam F/Y-rich N-terminus 1033 1076 IPR003888 GO:0005634
Spst10g00254 1255 ProSiteProfiles FYR domain FYRC motif profile. 1081 1171 IPR003889 GO:0005634
Spst10g00254 1255 ProSiteProfiles FYR domain FYRN motif profile. 1021 1079 IPR003888 GO:0005634
Spst10g00254 1255 SMART fyrn_3 1035 1079 IPR003888 GO:0005634
Spst10g00254 1255 MobiDBLite consensus disorder prediction 44 68 - -
Spst10g00254 1255 MobiDBLite consensus disorder prediction 804 826 - -
Spst10g00254 1255 MobiDBLite consensus disorder prediction 215 234 - -
Spst10g00254 1255 SMART JmjN_1 146 187 IPR003349 -
Spst10g00254 1255 SUPERFAMILY Clavaminate synthase-like 357 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00254 Spst-Chr10 2482261 2491538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00254 1 1250 JUMONJI Transcription Factor Family AT1G08620 55.547 0.0 1260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst10g00254 JmjC 3.1e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00254 K11446 - gmx:100800271 2296.16