Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00247 ATGTTGGAGAAGCTTAACCACACCATGTCTTCTTCCATTCAAAACAATCACCATCACATCAATGAAACCACACCACCATCCAATTCTGCAGAAAAGGGTTTTCATGGTTTCTCTGCGAAGGAGACAAAGGGTTTGGATTTGGATTTGAATGAACCAGTAATCAATACAAACCCTGAGACTTCTCTTACTTTGGTTCCAATTTCTCAGGTTTCTGCTGATGATAATTGTGTTGTGGCAATGGGAGGGTGTCAACCTTTTGCTCCTGAGTTGGATGTGTCACATGCTCCTCCAACACAAGTTGTTGAGCAAGTGCATTCATCCAATTCCAATGATGAGAAAATGGTGAAGTTTCCTTTTGATCTTAATGCAAATTTTGATGAGGAGGATCAAATTTCTTCCTCCAATGAAGCACATGCCAAAGATGGTGGTGGGAGTGAAGCCATTCAACCTTTACCTTCCTCTCATTTGGAGGTCACTGTAGAAGATGTTCTTCCTACAGACAATGATAGTGAAGATAGAGGCAGTGCTGTTGGGGGAGGATCAAACAGTTCTCAGACAAGGAAGAGAAAGAAATCCGTTGAGGAATCTGAGAAAGGGAGAGGGAAGGCTTTTCGTAGAGAAAATGTGGAAGTGAAGATTAAGAGACAAAAAGAGAATACAGTAGATGATGGATATCACTGGAGAAAGTATGGTCAAAAGCCTATTAAGGGAAACTTATTCCCTAGGTATAGTGCTCTCTCTCTCCTCACTCCTTTCATGTCCAAGGCCTACTACAGATGCACAAGTGCTGGGTGTTCTGTAAAGAAGCACGTGGAACGTGATTCGCACAACCAAAAGAATTTGATTACTACTTATGAGGGAAGACACAATCATGAACAACCAGCCTTCAGGAACCCTAGCAAACAATATGTAGAAGATGATGACGAAAATGACGAAGATGAAGAAGATGAAGAACTTGCTGCTGTTGCTGCAGCCAATACTCTATTGACTTTTGGGATGCCTAGGAATTTTTTGAATGTCCCAAACCTTGCAGAACCTCGAGTTCACACTCTTCAACTACTTCCCAATAACACAAATCCTGAATTTTTCAATAGGTTCATGAGACCCAACCATTTTGGAAGTTTCAACAATAATATGAATATTGGGTCTTCCTCATACACTCCCCAAATGCATTATTCTTCATTCTTGAATAACACCAATACCATGGCATACCAATCCTATGGAATTAACCTTGACCGTTATGTTGCCCCTCAACCTAGGTTTTCAATTCCACCACCATTTAACATGCCTTCTTCTTTTGGAGGTTTCCCTCAGGATAGGGTTAATGCTAATGGGTCCAGTTCAATGTGTCCTTTCAGAGAAACAGGTGCAAGAGATGGTAGGTGGAACTAG 1392 0.4131 MLEKLNHTMSSSIQNNHHHINETTPPSNSAEKGFHGFSAKETKGLDLDLNEPVINTNPETSLTLVPISQVSADDNCVVAMGGCQPFAPELDVSHAPPTQVVEQVHSSNSNDEKMVKFPFDLNANFDEEDQISSSNEAHAKDGGGSEAIQPLPSSHLEVTVEDVLPTDNDSEDRGSAVGGGSNSSQTRKRKKSVEESEKGRGKAFRRENVEVKIKRQKENTVDDGYHWRKYGQKPIKGNLFPRYSALSLLTPFMSKAYYRCTSAGCSVKKHVERDSHNQKNLITTYEGRHNHEQPAFRNPSKQYVEDDDENDEDEEDEELAAVAAANTLLTFGMPRNFLNVPNLAEPRVHTLQLLPNNTNPEFFNRFMRPNHFGSFNNNMNIGSSSYTPQMHYSSFLNNTNTMAYQSYGINLDRYVAPQPRFSIPPPFNMPSSFGGFPQDRVNANGSSSMCPFRETGARDGRWN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00247 463 Gene3D WRKY domain 206 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst10g00247 463 ProSiteProfiles WRKY domain profile. 216 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst10g00247 463 SMART WRKY_cls 221 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst10g00247 463 MobiDBLite consensus disorder prediction 130 208 - -
Spst10g00247 463 MobiDBLite consensus disorder prediction 285 314 - -
Spst10g00247 463 MobiDBLite consensus disorder prediction 1 31 - -
Spst10g00247 463 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 97 310 IPR044810 GO:0003700
Spst10g00247 463 Pfam WRKY DNA -binding domain 222 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst10g00247 463 SUPERFAMILY WRKY DNA-binding domain 217 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst10g00247 463 MobiDBLite consensus disorder prediction 187 208 - -
Spst10g00247 463 MobiDBLite consensus disorder prediction 444 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00247 Spst-Chr10 2389307 2392746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00247 134 297 WRKY Transcription Factor Family AT5G56270 37.079 2.55e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst10g00247 WRKY 1.9e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00247 K18835 - var:108323080 444.506